Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU6Hr1G021340	98.8	-	-	8870	108	Partial-Overlap

Transcripts from Gene BART1_0-u43238

Transcript	Length(bp)	Description
BART1_0-u43238.001	2841	2841 bp MSTRG.43238.1 MSTRG.43238
BART1_0-u43238.002	2872	2872 bp MSTRG.43238.2 MSTRG.43238
BART1_0-u43238.003	2848	2848 bp MSTRG.43238.3 MSTRG.43238
BART1_0-u43238.004	2764	2764 bp MSTRG.43238.4 MSTRG.43238
BART1_0-u43238.005	1301	1301 bp MSTRG.43238.5 MSTRG.43238
BART1_0-u43238.006	1912	1912 bp MSTRG.43238.6 MSTRG.43238
BART1_0-u43238.007	3481	3481 bp MSTRG.43238.7 MSTRG.43238
BART1_0-u43238.008	2868	2868 bp MSTRG.43238.8 MSTRG.43238
BART1_0-u43238.009	2400	2400 bp MSTRG.43238.9 MSTRG.43238
BART1_0-u43238.010	2393	2393 bp MSTRG.43238.10 MSTRG.43238

Exon Structure of BART1_0-u43238

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g05450.1	+1	0.0	608	348/518 (67%)	protein|Homeobox domain containing protein, expressed
TAIR PP10	AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR	+1	5e-44	172	89/186 (48%)	Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769
BRACH PP3	Bradi3g03747.3.p	+1	0.0	723	400/515 (78%)	pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0061087	positive regulation of histone H3-K27 methylation
GO:0035064	methylated histone binding
GO:0031491	nucleosome binding
GO:0035098	ESC/E(Z) complex
GO:0006952	defense response
GO:0044446	intracellular organelle part
GO:0009733	response to auxin
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0003700	DNA-binding transcription factor activity
GO:0046872	metal ion binding
GO:0045893	positive regulation of transcription, DNA-templated
GO:0070013	intracellular organelle lumen
GO:0034708	methyltransferase complex
GO:0016021	integral component of membrane

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons