- Transcript BART1_0-u39384.010
- Transcript IDBART1_0-u39384.010
- Gene IDBART1_0-u39384
Barley RTD
Exon Structure of BART1_0-u39384.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610335476 | 610335182 | + |
| chr5H | 2 | 610335745 | 610335608 | + |
| chr5H | 3 | 610335929 | 610335826 | + |
| chr5H | 4 | 610336235 | 610336014 | + |
| chr5H | 5 | 610337060 | 610336670 | + |
| chr5H | 6 | 610338426 | 610337999 | + |
| chr5H | 7 | 610338746 | 610338653 | + |
| chr5H | 8 | 610339016 | 610338820 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.31716 | 4.06501 | 3.00512 |
| morex | ETI | 5.67357 | 3.38762 | 4.14997 |
| morex | LEA | 4.40652 | 3.05729 | 5.05354 |
| morex | EPI | 2.03872 | 1.71775 | 1.95456 |
| morex | ROO | 1.38182 | 2.76337 | 1.3082 |
| morex | ROO2 | 2.85506 | 2.49428 | 1.45289 |
| morex | NOD | 2.35253 | 1.53768 | 1.88006 |
| morex | RAC | 2.21337 | 3.23065 | 2.28272 |
| morex | INF1 | 6.81722 | 9.489 | 6.6575 |
| morex | INF2 | 3.06342 | 3.28298 | 6.21941 |
| morex | CAR5 | 2.94403 | 3.89071 | 3.17898 |
| morex | CAR15 | 0.282204 | 0 | 2.05927 |
| morex | LEM | 3.28347 | 1.50447 | 1.84802 |
| morex | LOD | 2.9704 | 2.1964 | 1.88072 |
| morex | PAL | 1.35608 | 2.6208 | 2.74318 |
| morex | SEN | 3.12591 | 2.44525 | 2.27398 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +3 | 0.0 | 426 | 251/329 (76%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+3 | 7e-94 | 271 | 170/333 (51%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.1.p | +3 | 0.0 | 486 | 294/346 (85%) | pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1869 bp)
>BART1_0-u39384.010 1869 150831_barley_pseudomolecules GGCTCAAGTTGTTCAGGCAGAGCATGCTGACACAAACCAAGACAGTTCTATTGCATTGGG TGGATCATTGGGAAGCGAAGATCAAGACCAAAGTGAGAATAATGGAAAATGGGAATGTGA TTGTAGTGTATTAGACGGTTTTCTGGATAAGTGCAAGAAGTCAGTAGTGAAACGTGGCGA CTGGGTGCACTTCTGCTGTAAGCCTGAAAAGAGCTTGAAAAGCAATCTGAATCAAATTCC AGTGCTTCATCATTTGTATCTTGATGACCAGAAGGTTGAAATTAATCATTGCCACGTCAT ACTTTATGATGTTCCTGTTGCTGGTAGAAACCATTTCTCCCTGGGCGAGGATGCACCTTA TAGGATGAAGTCCCCCTTCAAAAGGCCAAATTGGATAAATAATCTGCAAAAGAAACGACC ATTTCTTGATTTGGATCCGATTGTGTTGGCGCTTAATTGTTCAAATTCAGCTAGATTGTC AGTTGCTTGGAAAACTACTAATAACAGCTCTGCGGCTCATTTCTTGTTTGCAACTGTGAT TGATGCCTTAGTTCAAGTGGCACAACATTTCACAGGAATAATTTTGGCTTCAGTATCAAC TATTATCTACATCTTCATTCAGCTGTTCCGAAAATGTTTGAGCCATGTCTCTGAGCACTT TATATTACAAAAGGTTTTCAGACACTCATGGAAAAACATGCATCTCCGTTGTTCCCAAAT TCTTTATTGGCCGATTTTCCTCCAAGATACTTCCCTAAGCACTATTGTTGAACATGGAGA CTATTTGCTCTTGGATTTTTGCTCTTCTTCACTACATGACAGATGCTGTCTTGAGATCTG GTTGTGTGTGGCTGATGGGTGTTCCAGCAGGCTTTAAGCTGAATACTGAGTTAGCAGAGC TTCTAGGCATGATTTCTTTGAATGCAATCCAAATTTATTCTACCCTTTGGTTCATGGTGG GAGGCTTCCTTAGGCATATAATTCAAGGCCTTGCATTTTCTGGAATTATTTTAGGTTTCA CGGTTCCTGTTTCAATCTTCATTGACATTATCCAGCTTGCGACATTGCATGTTACCATGC TTCAGTGGTTAATCTCCTTAATATATTCAAGGCAGATTCAGACAGTGACATCATTGTGGC GTCTTTTCAGAGGGCGCAAGTGGAATCCTCTTAGGCAGAGATTAGATAGCTATGACTACA CGGTTGAACAACATGTGGTTGGTTCGCTGTTGTTTACACCAGTCTTGCTTCTTCTACCCA CAGCTTCTATATTCTACATATTTTTCTCTATCTTGAGCAGCACAATCATCTGTTTGTGTA TAGTGTTGGAAACTGCAATATGTATAATCCACTCTACTCCTTATGCTGCGGTAATTCTAT GGGTGACAAGGAGGCAAAGATTTCCTGCTGGATTAATGTTCCTTCCTATGTCATCGTCAT CTGTATCTACTGATGATGATGCTCTATCAGTTGAATATCATTCAACCAGTTTATCTGGCG AAAGGAAAACAGACGAACTCATCCATGTACATTCAGTACCACTAGTTTCAGAACTTAACT GTAACTATAACACCCTCGGACAAGTAATCGGGCCACATTACCAGAAAGTTTTCAACGGGA TCGCTCTCCCCTTCTGCAAACAACTGGCACATGGAATCCTTAGGGGCACAAGGATACCTA CAACACTGCATCTGCCCTCTTCTCCACTGCCCTGGATGCATATTGGCATTAGAGAATACT GGATGCTTTGCCGTCGCGCGACCAAGTGGGGAAGGAATTAAAAGTTCTCCGCTTATGATT AACTATTAGTCGCTCAGAGAATTTTTCTTAGTTGCCACCGTTTTGTAGTGGATGTTTTGC TTTAGTTGC
Protein Sequence (291 aa)
>BART1_0-u39384.010 291 150831_barley_pseudomolecules AQVVQAEHADTNQDSSIALGGSLGSEDQDQSENNGKWECDCSVLDGFLDKCKKSVVKRGD WVHFCCKPEKSLKSNLNQIPVLHHLYLDDQKVEINHCHVILYDVPVAGRNHFSLGEDAPY RMKSPFKRPNWINNLQKKRPFLDLDPIVLALNCSNSARLSVAWKTTNNSSAAHFLFATVI DALVQVAQHFTGIILASVSTIIYIFIQLFRKCLSHVSEHFILQKVFRHSWKNMHLRCSQI LYWPIFLQDTSLSTIVEHGDYLLLDFCSSSLHDRCCLEIWLCVADGCSSRL