- Transcript BART1_0-u39384.006
- Transcript IDBART1_0-u39384.006
- Gene IDBART1_0-u39384
Barley RTD
Exon Structure of BART1_0-u39384.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610332575 | 610332349 | + |
| chr5H | 2 | 610333705 | 610333396 | + |
| chr5H | 3 | 610335480 | 610335042 | + |
| chr5H | 4 | 610335745 | 610335608 | + |
| chr5H | 5 | 610335929 | 610335826 | + |
| chr5H | 6 | 610336235 | 610336014 | + |
| chr5H | 7 | 610336816 | 610336566 | + |
| chr5H | 8 | 610337060 | 610336925 | + |
| chr5H | 9 | 610338426 | 610337999 | + |
| chr5H | 10 | 610338746 | 610338653 | + |
| chr5H | 11 | 610339112 | 610338820 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 1.06606 | 0.578289 |
| morex | ETI | 2.70562 | 0.576973 | 2.82775 |
| morex | LEA | 0 | 0.357142 | 0.44564 |
| morex | EPI | 0 | 1.40497 | 0.31528 |
| morex | ROO | 0 | 0.217992 | 0.00000000281306 |
| morex | ROO2 | 1.29852 | 1.14079 | 0.635062 |
| morex | NOD | 0.623744 | 0 | 0.283747 |
| morex | RAC | 0 | 1.13366 | 0.61287 |
| morex | INF1 | 3.15487 | 1.91065 | 0.283857 |
| morex | INF2 | 1.15616 | 2.12466 | 1.77786 |
| morex | CAR5 | 0.0230102 | 1.00744 | 3.44655 |
| morex | CAR15 | 0 | 0.00000000319232 | 0 |
| morex | LEM | 1.02189 | 1.81046 | 1.06565 |
| morex | LOD | 1.13737 | 0.987315 | 0.927082 |
| morex | PAL | 1.80077 | 0.0725701 | 2.67393 |
| morex | SEN | 1.61641 | 0.00908206 | 1.35176 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +2 | 0.0 | 610 | 353/525 (67%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+2 | 4e-103 | 331 | 218/534 (41%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.1.p | +2 | 0.0 | 723 | 411/532 (77%) | pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2642 bp)
>BART1_0-u39384.006 2642 150831_barley_pseudomolecules GCTCCCGCCTCTCGCTGTCCGGCTGCTTCCGCGCGAGCGCGAGCTCGACCACGCCGTTCC CCTACTGCGCGCAGCAGTAGTCCCTGCCGGCATCCCCCCGTGGCCTCCACGCAGCCGCCG GGTCGCTACCGCTCTCGCTGACTCGTGCAGGCACCGCGCAGGGGCTGCTGGCCGCTGCCT ACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGCCGTATCCCCACAGGGCCACAGAAGATC AATCTCTGTTGAGTAAATAGGAATTTGGGCCTGTGATTCTGTGGTGCGGGTGCAGTTCCA GAACCTTGTGGGTCCAGCTGAACTCCCTATGCCCCACATTTAGTCTGCCCCTGCATGGAC CGGTGCAGGATCTGGTGGCCGCGCCAGCAACATCAGTCTGAATTGGAGTCCGTCTCTGCC AGATATCTCCTTTTTGGATGGCTCTTCCCCCATGCGGGGTCACTCGACATTGTTGTCGCG GCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCTTTCCCCAACCTCGACACTTTCCAGACT GCTATCCTTTCCTCAAATAAAACGATGCCAACAGTGCTTCAAGAATCTGCAGCATTTACC ATCCTTGGGGATTGTGTTGTACATCTTCCAAGAGATTTTGAAGGCTGCTGTGTTAAGCAA AAATATCACCTGTTGCGGGCTCAAGTTGTTCAGGCAGAGCATGCTGACACAAACCAAGAC AGTTCTATTGCATTGGGTGGATCATTGGGAAGCGAAGATCAAGACCAAAGTGAGAATAAT GGAAAATGGGAATGTGATTGTAGTGTATTAGACGGTTTTCTGGATAAGTGCAAGAAGTCA GTAGTGAAACGTGGCGACTGGGTGCACTTCTGCTGTAAGCCTGAAAAGAGCTTGAAAAGC AATCTGAATCAAATTCCAGTGCTTCATCATTTGTATCTTGATGACCAGAAGGTTGAAATT AATCATTGCCACGTATGTCATACTTTATGATGTTCCTGTTGCTGGTAGAAACCATTTCTC CCTGGGCGAGGATGCACCTTATAGGATGAAGTCCCCCTTCAAAAGGCCAAATTGGATAAA TAATCTGCAAAAGAAACGACCATTTCTTGATTTGGATCCGATTGTGTTGGCGCTTAATTG TTCAAATTCAGCTAGATTGTCAGTTGCTTGGAAAACTACTAATAACAGCTCTGCGGCTCA TTTCTTGTTTGCAACTGTGATTGATGCCTTAGTTCAAGTGGCACAACATTTCACAGGAAT AATTTTGGCTTCAGTATCAACTATTATCTACATCTTCATTCAGCTGTTCCGAAAATGTTT GAGCCATGTCTCTGAGCACTTTATATTACAAAAGGTTTTCAGACACTCATGGAAAAACAT GCATCTCCGTTGTTCCCAAATTCTTTATTGGCCGATTTTCCTCCAAGATACTTCCCTAAG CTCCTATGTGAATGTCGAATATGCACACAAAGCTGCAATCCAGAAGCATGCTTTATGGTC AAATATTATCATGGATCTTCTGATGGGTTTCATCCTTGGAGCAGCACTATTGTTGAACAT GGAGACTATTTGCTCTTGGATTTTTGCTCTTCTTCACTACATGACAGATGCTGTCTTGAG ATCTGGTTGTGTGTGGCTGATGGGTGTTCCAGCAGGCTTTAAGCTGAATACTGAGTTAGC AGAGCTTCTAGGTTTCACGGTTCCTGTTTCAATCTTCATTGACATTATCCAGCTTGCGAC ATTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTAATATATTCAAGGCAGATTCAGAC AGTGACATCATTGTGGCGTCTTTTCAGAGGGCGCAAGTGGAATCCTCTTAGGCAGAGATT AGATAGCTATGACTACACGGTTGAACAACATGTGGTTGGTTCGCTGTTGTTTACACCAGT CTTGCTTCTTCTACCCACAGCTTCTATATTCTACATATTTTTCTCTATCTTGAGCAGCAC AATCATCTGTTTGTGTATAGTGTTGGAAACTGCAATATGTATAATCCACTCTACTCCTTA TGCTGCGGTAATTCTATGGGTGACAAGGAGGCAAAGATTTCCTGCTGGATTAATGTTCCT TCCTATGTCATCGTCATCTGTATCTACTGATGATGATGCTCTATCAGTTGAATATCATTC AACCAGTTTATCTGGCGAAAGGAAAACAGACGAACTCATCCATGTACATTCAGTACCACT AGTTTCAGAACTTAACTGTAACTATAACACCCTCGGACAAGTAATCGGGCCACATTACCA GAAAGTTTTCAACGGGATCGCTCTCCCCTTCTGCAAACAACTGGCACATGGAATCCTTAG GGGCACAAGGATACCTACAACACTGCATCTGCCCTCTTCTCCACTGCCCTGGATGCATAT TGGCATTAGAGAATACTGGATGCTTTGCCGTCGCGCGACCAAGTGGGGAAGGAATTAAAA GTTCTCCGCTTATGATTAACTATTAGTCGCTCAGAGAATTTTTCTTAGTTGCCACCGTTT TGTAGTGGATGTTTTGCTTTAGTTGCCTAACACAGTAACAATTGTTGGTAGTTGCCAAGA TGTTGCGTCCTGGACTGCTTTTGTAGTACTGATACCATTTGGAGTTGAGGAATCGACACG TA
Protein Sequence (505 aa)
>BART1_0-u39384.006 505 150831_barley_pseudomolecules MTRRLKLIIATYVILYDVPVAGRNHFSLGEDAPYRMKSPFKRPNWINNLQKKRPFLDLDP IVLALNCSNSARLSVAWKTTNNSSAAHFLFATVIDALVQVAQHFTGIILASVSTIIYIFI QLFRKCLSHVSEHFILQKVFRHSWKNMHLRCSQILYWPIFLQDTSLSSYVNVEYAHKAAI QKHALWSNIIMDLLMGFILGAALLLNMETICSWIFALLHYMTDAVLRSGCVWLMGVPAGF KLNTELAELLGFTVPVSIFIDIIQLATLHVTMLQWLISLIYSRQIQTVTSLWRLFRGRKW NPLRQRLDSYDYTVEQHVVGSLLFTPVLLLLPTASIFYIFFSILSSTIICLCIVLETAIC IIHSTPYAAVILWVTRRQRFPAGLMFLPMSSSSVSTDDDALSVEYHSTSLSGERKTDELI HVHSVPLVSELNCNYNTLGQVIGPHYQKVFNGIALPFCKQLAHGILRGTRIPTTLHLPSS PLPWMHIGIREYWMLCRRATKWGRN