- Transcript BART1_0-u39384.005
- Transcript IDBART1_0-u39384.005
- Gene IDBART1_0-u39384
Barley RTD
Exon Structure of BART1_0-u39384.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610332575 | 610332349 | + |
| chr5H | 2 | 610333705 | 610333396 | + |
| chr5H | 3 | 610335480 | 610335042 | + |
| chr5H | 4 | 610335745 | 610335608 | + |
| chr5H | 5 | 610335929 | 610335826 | + |
| chr5H | 6 | 610336235 | 610336014 | + |
| chr5H | 7 | 610337060 | 610336670 | + |
| chr5H | 8 | 610338426 | 610337999 | + |
| chr5H | 9 | 610338746 | 610338653 | + |
| chr5H | 10 | 610339112 | 610338820 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.588834 | 0.937425 |
| morex | ETI | 0.725239 | 1.8614 | 1.22278 |
| morex | LEA | 1.34171 | 0.49003 | 0 |
| morex | EPI | 0.186312 | 0.0000059643 | 0 |
| morex | ROO | 0 | 0 | 0.144533 |
| morex | ROO2 | 0 | 0.000643393 | 0 |
| morex | NOD | 0.481315 | 0.14513 | 0.639087 |
| morex | RAC | 0.544692 | 0 | 0.763275 |
| morex | INF1 | 1.18569 | 0 | 3.66454 |
| morex | INF2 | 5.85198 | 1.68925 | 0.75011 |
| morex | CAR5 | 2.64687 | 0.0868917 | 0.738209 |
| morex | CAR15 | 1.66903 | 2.01693 | 2.10137 |
| morex | LEM | 0.0000122921 | 1.04801 | 0 |
| morex | LOD | 0.141995 | 0.00000000556583 | 1.12999 |
| morex | PAL | 0 | 1.83186 | 0 |
| morex | SEN | 0.0000010666 | 2.08102 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +3 | 0.0 | 426 | 251/329 (76%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+3 | 4e-95 | 271 | 170/333 (51%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.1.p | +3 | 0.0 | 486 | 294/346 (85%) | pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2646 bp)
>BART1_0-u39384.005 2646 150831_barley_pseudomolecules GCTCCCGCCTCTCGCTGTCCGGCTGCTTCCGCGCGAGCGCGAGCTCGACCACGCCGTTCC CCTACTGCGCGCAGCAGTAGTCCCTGCCGGCATCCCCCCGTGGCCTCCACGCAGCCGCCG GGTCGCTACCGCTCTCGCTGACTCGTGCAGGCACCGCGCAGGGGCTGCTGGCCGCTGCCT ACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGCCGTATCCCCACAGGGCCACAGAAGATC AATCTCTGTTGAGTAAATAGGAATTTGGGCCTGTGATTCTGTGGTGCGGGTGCAGTTCCA GAACCTTGTGGGTCCAGCTGAACTCCCTATGCCCCACATTTAGTCTGCCCCTGCATGGAC CGGTGCAGGATCTGGTGGCCGCGCCAGCAACATCAGTCTGAATTGGAGTCCGTCTCTGCC AGATATCTCCTTTTTGGATGGCTCTTCCCCCATGCGGGGTCACTCGACATTGTTGTCGCG GCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCTTTCCCCAACCTCGACACTTTCCAGACT GCTATCCTTTCCTCAAATAAAACGATGCCAACAGTGCTTCAAGAATCTGCAGCATTTACC ATCCTTGGGGATTGTGTTGTACATCTTCCAAGAGATTTTGAAGGCTGCTGTGTTAAGCAA AAATATCACCTGTTGCGGGCTCAAGTTGTTCAGGCAGAGCATGCTGACACAAACCAAGAC AGTTCTATTGCATTGGGTGGATCATTGGGAAGCGAAGATCAAGACCAAAGTGAGAATAAT GGAAAATGGGAATGTGATTGTAGTGTATTAGACGGTTTTCTGGATAAGTGCAAGAAGTCA GTAGTGAAACGTGGCGACTGGGTGCACTTCTGCTGTAAGCCTGAAAAGAGCTTGAAAAGC AATCTGAATCAAATTCCAGTGCTTCATCATTTGTATCTTGATGACCAGAAGGTTGAAATT AATCATTGCCACGTATGTCATACTTTATGATGTTCCTGTTGCTGGTAGAAACCATTTCTC CCTGGGCGAGGATGCACCTTATAGGATGAAGTCCCCCTTCAAAAGGCCAAATTGGATAAA TAATCTGCAAAAGAAACGACCATTTCTTGATTTGGATCCGATTGTGTTGGCGCTTAATTG TTCAAATTCAGCTAGATTGTCAGTTGCTTGGAAAACTACTAATAACAGCTCTGCGGCTCA TTTCTTGTTTGCAACTGTGATTGATGCCTTAGTTCAAGTGGCACAACATTTCACAGGAAT AATTTTGGCTTCAGTATCAACTATTATCTACATCTTCATTCAGCTGTTCCGAAAATGTTT GAGCCATGTCTCTGAGCACTTTATATTACAAAAGGTTTTCAGACACTCATGGAAAAACAT GCATCTCCGTTGTTCCCAAATTCTTTATTGGCCGATTTTCCTCCAAGATACTTCCCTAAG CACTATTGTTGAACATGGAGACTATTTGCTCTTGGATTTTTGCTCTTCTTCACTACATGA CAGATGCTGTCTTGAGATCTGGTTGTGTGTGGCTGATGGGTGTTCCAGCAGGCTTTAAGC TGAATACTGAGTTAGCAGAGCTTCTAGGCATGATTTCTTTGAATGCAATCCAAATTTATT CTACCCTTTGGTTCATGGTGGGAGGCTTCCTTAGGCATATAATTCAAGGCCTTGCATTTT CTGGAATTATTTTAGGTTTCACGGTTCCTGTTTCAATCTTCATTGACATTATCCAGCTTG CGACATTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTAATATATTCAAGGCAGATTC AGACAGTGACATCATTGTGGCGTCTTTTCAGAGGGCGCAAGTGGAATCCTCTTAGGCAGA GATTAGATAGCTATGACTACACGGTTGAACAACATGTGGTTGGTTCGCTGTTGTTTACAC CAGTCTTGCTTCTTCTACCCACAGCTTCTATATTCTACATATTTTTCTCTATCTTGAGCA GCACAATCATCTGTTTGTGTATAGTGTTGGAAACTGCAATATGTATAATCCACTCTACTC CTTATGCTGCGGTAATTCTATGGGTGACAAGGAGGCAAAGATTTCCTGCTGGATTAATGT TCCTTCCTATGTCATCGTCATCTGTATCTACTGATGATGATGCTCTATCAGTTGAATATC ATTCAACCAGTTTATCTGGCGAAAGGAAAACAGACGAACTCATCCATGTACATTCAGTAC CACTAGTTTCAGAACTTAACTGTAACTATAACACCCTCGGACAAGTAATCGGGCCACATT ACCAGAAAGTTTTCAACGGGATCGCTCTCCCCTTCTGCAAACAACTGGCACATGGAATCC TTAGGGGCACAAGGATACCTACAACACTGCATCTGCCCTCTTCTCCACTGCCCTGGATGC ATATTGGCATTAGAGAATACTGGATGCTTTGCCGTCGCGCGACCAAGTGGGGAAGGAATT AAAAGTTCTCCGCTTATGATTAACTATTAGTCGCTCAGAGAATTTTTCTTAGTTGCCACC GTTTTGTAGTGGATGTTTTGCTTTAGTTGCCTAACACAGTAACAATTGTTGGTAGTTGCC AAGATGTTGCGTCCTGGACTGCTTTTGTAGTACTGATACCATTTGGAGTTGAGGAATCGA CACGTA
Protein Sequence (335 aa)
>BART1_0-u39384.005 335 150831_barley_pseudomolecules METICSWIFALLHYMTDAVLRSGCVWLMGVPAGFKLNTELAELLGMISLNAIQIYSTLWF MVGGFLRHIIQGLAFSGIILGFTVPVSIFIDIIQLATLHVTMLQWLISLIYSRQIQTVTS LWRLFRGRKWNPLRQRLDSYDYTVEQHVVGSLLFTPVLLLLPTASIFYIFFSILSSTIIC LCIVLETAICIIHSTPYAAVILWVTRRQRFPAGLMFLPMSSSSVSTDDDALSVEYHSTSL SGERKTDELIHVHSVPLVSELNCNYNTLGQVIGPHYQKVFNGIALPFCKQLAHGILRGTR IPTTLHLPSSPLPWMHIGIREYWMLCRRATKWGRN