- Transcript BART1_0-u39384.001
- Transcript IDBART1_0-u39384.001
- Gene IDBART1_0-u39384
Barley RTD
Exon Structure of BART1_0-u39384.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 610332575 | 610332205 | + |
| chr5H | 2 | 610333705 | 610333396 | + |
| chr5H | 3 | 610335476 | 610335042 | + |
| chr5H | 4 | 610335745 | 610335608 | + |
| chr5H | 5 | 610335929 | 610335826 | + |
| chr5H | 6 | 610336235 | 610336014 | + |
| chr5H | 7 | 610337060 | 610336566 | + |
| chr5H | 8 | 610338426 | 610337999 | + |
| chr5H | 9 | 610338746 | 610338653 | + |
| chr5H | 10 | 610341353 | 610338820 | + |
| chr5H | 11 | 610342461 | 610341481 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.0976452 | 0 |
| morex | ETI | 0.218288 | 0.108163 | 0.143266 |
| morex | LEA | 0.0529125 | 0 | 0 |
| morex | EPI | 0.423322 | 0.0693977 | 0.392003 |
| morex | ROO | 0 | 0.0254778 | 0.0792905 |
| morex | ROO2 | 0.0558296 | 0.0176372 | 0.0191923 |
| morex | NOD | 0.230362 | 0.22818 | 0.0719537 |
| morex | RAC | 0.189814 | 0.214747 | 0.183062 |
| morex | INF1 | 0.20485 | 0.308874 | 0.0961813 |
| morex | INF2 | 1.94156 | 1.44377 | 2.83151 |
| morex | CAR5 | 0.0428636 | 0.206834 | 0.102565 |
| morex | CAR15 | 0.133633 | 0.166063 | 0.0538972 |
| morex | LEM | 0.279161 | 0.112419 | 0.131045 |
| morex | LOD | 0.0768012 | 0.117526 | 0.0982293 |
| morex | PAL | 0 | 0.024333 | 0.110009 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g22370.2 | +1 | 0.0 | 918 | 502/725 (69%) | protein|N-acetylglucosaminyl transferase component, putative, expressed |
| TAIR PP10 | AT3G57170 @ ARAPORT AT3G57170.1 @ TAIR |
+1 | 1e-113 | 374 | 233/531 (44%) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 |
| BRACH PP3 | Bradi1g06945.1.p | +1 | 0.0 | 1112 | 592/737 (80%) | pacid=32803293 transcript=Bradi1g06945.1 locus=Bradi1g06945 ID=Bradi1g06945.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6112 bp)
>BART1_0-u39384.001 6112 150831_barley_pseudomolecules CTGGGAGATCCACTTCCTGGGCCAGGCCCGTGTGGCAGCCAGCGATGCGAGCGATACACA GTAGCACCCCAGCCGATCCCTTCGCCCCTCCCACGCATCTCCCGACCGCCTCCGCCCCCC GCCGCCCGCCGCCGCCCGCTCCCGGCTCCCGCCTCTCGCTGTCCGGCTGCTTCCGCGCGA GCGCGAGCTCGACCACGCCGTTCCCCTACTGCGCGCAGCAGTAGTCCCTGCCGGCATCCC CCCGTGGCCTCCACGCAGCCGCCGGGTCGCTACCGCTCTCGCTGACTCGTGCAGGCACCG CGCAGGGGCTGCTGGCCGCTGCCTACTGCTCGGCTTTGGACAGGGGAAGCCCGGAGCCGT ATCCCCACAGGGCCACAGAAGATCAATCTCTGTTGAGTAAATAGGAATTTGGGCCTGTGA TTCTGTGGTGCGGGTGCAGTTCCAGAACCTTGTGGGTCCAGCTGAACTCCCTATGCCCCA CATTTAGTCTGCCCCTGCATGGACCGGTGCAGGATCTGGTGGCCGCGCCAGCAACATCAG TCTGAATTGGAGTCCGTCTCTGCCAGATATCTCCTTTTTGGATGGCTCTTCCCCCATGCG GGGTCACTCGACATTGTTGTCGCGGCGTTCGTCTCCGAGGGAGAGATCTTGCGGTCTTTC CCCAACCTCGACACTTTCCAGACTGCTATCCTTTCCTCAAATAAAACGATGCCAACAGTG CTTCAAGAATCTGCAGCATTTACCATCCTTGGGGATTGTGTTGTACATCTTCCAAGAGAT TTTGAAGGCTGCTGTGTTAAGCAAAAATATCACCTGTTGCGGGCTCAAGTTGTTCAGGCA GAGCATGCTGACACAAACCAAGACAGTTCTATTGCATTGGGTGGATCATTGGGAAGCGAA GATCAAGACCAAAGTGAGAATAATGGAAAATGGGAATGTGATTGTAGTGTATTAGACGGT TTTCTGGATAAGTGCAAGAAGTCAGTAGTGAAACGTGGCGACTGGGTGCACTTCTGCTGT AAGCCTGAAAAGAGCTTGAAAAGCAATCTGAATCAAATTCCAGTGCTTCATCATTTGTAT CTTGATGACCAGAAGGTTGAAATTAATCATTGCCACGTCATACTTTATGATGTTCCTGTT GCTGGTAGAAACCATTTCTCCCTGGGCGAGGATGCACCTTATAGGATGAAGTCCCCCTTC AAAAGGCCAAATTGGATAAATAATCTGCAAAAGAAACGACCATTTCTTGATTTGGATCCG ATTGTGTTGGCGCTTAATTGTTCAAATTCAGCTAGATTGTCAGTTGCTTGGAAAACTACT AATAACAGCTCTGCGGCTCATTTCTTGTTTGCAACTGTGATTGATGCCTTAGTTCAAGTG GCACAACATTTCACAGGAATAATTTTGGCTTCAGTATCAACTATTATCTACATCTTCATT CAGCTGTTCCGAAAATGTTTGAGCCATGTCTCTGAGCACTTTATATTACAAAAGGTTTTC AGACACTCATGGAAAAACATGCATCTCCGTTGTTCCCAAATTCTTTATTGGCCGATTTTC CTCCAAGATACTTCCCTAAGCTCCTATGTGAATGTCGAATATGCACACAAAGCTGCAATC CAGAAGCATGCTTTATGGTCAAATATTATCATGGATCTTCTGATGGGTTTCATCCTTGGA GCAGCACTATTGTTGAACATGGAGACTATTTGCTCTTGGATTTTTGCTCTTCTTCACTAC ATGACAGATGCTGTCTTGAGATCTGGTTGTGTGTGGCTGATGGGTGTTCCAGCAGGCTTT AAGCTGAATACTGAGTTAGCAGAGCTTCTAGGCATGATTTCTTTGAATGCAATCCAAATT TATTCTACCCTTTGGTTCATGGTGGGAGGCTTCCTTAGGCATATAATTCAAGGCCTTGCA TTTTCTGGAATTATTTTAGGTTTCACGGTTCCTGTTTCAATCTTCATTGACATTATCCAG CTTGCGACATTGCATGTTACCATGCTTCAGTGGTTAATCTCCTTAATATATTCAAGGCAG ATTCAGACAGTGACATCATTGTGGCGTCTTTTCAGAGGGCGCAAGTGGAATCCTCTTAGG CAGAGATTAGATAGCTATGACTACACGGTTGAACAACATGTGGTTGGTTCGCTGTTGTTT ACACCAGTCTTGCTTCTTCTACCCACAGCTTCTATATTCTACATATTTTTCTCTATCTTG AGCAGCACAATCATCTGTTTGTGTATAGTGTTGGAAACTGCAATATGTATAATCCACTCT ACTCCTTATGCTGCGGTAATTCTATGGGTGACAAGGAGGCAAAGATTTCCTGCTGGATTA ATGTTCCTTCCTATGTCATCGTCATCTGTATCTACTGATGATGATGCTCTATCAGTTGAA TATCATTCAACCAGTTTATCTGGCGAAAGGAAAACAGACGAACTCATCCATGTACATTCA GTACCACTAGTTTCAGAACTTAACTGTAACTATAACACCCTCGGACAAGTAATCGGGCCA CATTACCAGAAAGTTTTCAACGGGATCGCTCTCCCCTTCTGCAAACAACTGGCACATGGA ATCCTTAGGGGCACAAGGATACCTACAACACTGCATCTGCCCTCTTCTCCACTGCCCTGG ATGCATATTGGCATTAGAGAATACTGGATGCTTTGCCGTCGCGCGACCAAGTGGGGAAGG AATTAAAAGTTCTCCGCTTATGATTAACTATTAGTCGCTCAGAGAATTTTTCTTAGTTGC CACCGTTTTGTAGTGGATGTTTTGCTTTAGTTGCCTAACACAGTAACAATTGTTGGTAGT TGCCAAGATGTTGCGTCCTGGACTGCTTTTGTAGTACTGATACCATTTGGAGTTGAGGAA TCGACACGTAGGGAAAATTAATGTGTTTGTTACAAGCATACAAGTTCTTCACATTCACGT AAATGCGTTGCGACCAAAATAGATGTGGTGGTGCACTCTCAGCGAGTAGGGTGGCATGAC TCAGTACTTAAGTTTGGTGGTTGGTGTTATTTAGAGTTTGTTAGAACCTGTTCATGGTGG TGAAAATCTCAGATCGGTGTGATGGCCCGCTAGTAGAATTAAGGGAAATCACAGATCGGA ATGTAACTTGGGATTGGAGAACGGGAACAACAGGAAAGAAATTATGGGATATGGAGAGGG TAGGTTGATAGTTCACATAATTCTCATTTCCTTCCAGGGGATGGCATCCAGCCTCTTTTA AACACACACCCACACACTTACAAGCGGGACCCCTGGTCCATAGACCACACACTACTACAC CTGTCAGCTCACTCCATTGGTTCTTTATGTGGACCCCTCTAGATCACCGCCTTCGTTATT GACACACCGAAATTTATTGGTCATGAAGGCTTGACAATCAGGCTATCAATCTACCCTCTT GCATGATATATCTTTCTGATGCCTTTCAAACCCAAGTCTACGCATTTTCTCCTCCTTGAA ACAAAAAAGGCAACACATTTTTCCTTGAATGTGTCGAGCCTAAACTTGTTTTACTCAGCT ATAATTCGAGGAACTCTTTGTCATCTACTTTTTTTAATGGTTTTTCTCATCTACTTGGAA CTCTTCATTGTATTCTCTTATCATACATACATTGGGTCAAGTATAAAATTGTATCACATA TATAGGAGGTGCCCATGTATTAGAATGTGTGAGAGGAGAAGATATATGTGAAGCAGAACC AATGAAAAGAGATGGTCGTGCAGTACACTGGTAGTTTAATGCGCAACATTTCACATAATG AGTAGTGGTTGGTGCTGAGCTCGGCTTAATGGATGGCTTTGGTTTTTTTCTTCTATTTAT TACGTTCTTTGGGTGGTGTCTAAGATTTTCAAATGAAGGATACTGAAACCTCACGAGTGA GAGGCGCAATAGCTCTGCAGCCGTTGCTCCCCTCGATTTTTTTTGTTTACTTTGTTCATA ATTGGAGAGGTAGCACGACAACATTAGATGTATGATAAGAGGGGGAAACAAATTAATTCT CGCCATGTGCCTTTCGTCGTATTTTTTCTTTTGCCAATATCCAACAGCTTAACGTAGTAA TCGTTTCAGATGTATGATAAGAGGGGGAAACAAATTAATAACATGAACACATGACTCTTC AACGCACAAGCTAGATCACTGCAGCTAGCTATTTGGTACATATCGAGAGATATTTTGCTA CTTCGCTTATTTGTTCCTTCTCATGTTGTGTCACGGAAAAAAGAGTAAATAGCATAAAAC TATTAGTTTACAGGCTAGGGTTTTAAAAAACAATCGGTTTTTAATTTTTTCCAGATAACT ACCAAATGTGTGGTCGGCTGTTTCGACTAGCGATTTAATCGCTTTCCTGACAGAATGGGC CCACCCGTCAGGCCACGTGGCCCAGCGCGGCGCGGCGCAGCAGTTAACAGCCGTTATCCC GACCGGTCCGGTCGGAACTGGGTAATAAATAACCCTCCGGTTGGGTCGCTCGGTCCCTGC CCGCTCAGTCCCATTCTCCCACTCCCCTGCTCTCCCCTTCTCCCACTCCCCTGCTCGAGT ACAAGCTCGCCGCCGCTGGCCGTCTCCGAGGTCTGCTGCCGTTGACCTCCTTCCCGCCAT GACTTCCTGGAATAACGAGGAAACGAGCTTCGACGAGGATTGCGAGGCCATCAACATGGA CATGGGAATTTTTGTAAGTTTATTCCTTGCCACCTAAGGTTAGGGTTAGAGTTAAATGCT AGGCTAATGCCATGGATCTTGCATAGTTTAGGGTTATTGTTATGTCTGTAATATGGATCT TGATTAGGTAGGGTGGGTGTTGGTTGTAGGATTGAGTTAACTTAGGGTTCATCTTTGTAC AGTGTAGGGTTGTTGCTGATTTGAGAATTTATGTAGTGTTTAGGGTTAATACACAGCTCA AATATATTGTGCTTTTGAGTGGTGATTGAAACCAGTGTTGTTGGTGTTTTTTTAGTTGCA GGAGGAACCATGCACCATTGTGGAGACCGTTTTCTGTGGCCAACTTGAGCTTTTTGAACC CAAATGCATTATGCACCACATGAGGCCTCTTAAGTGTGTGGATTTTGAAGGCACTTTAAC AGGAAGGCATTTCTATGGCTGCCCAGTCTAGGAAAATGGTGTGAATTGTGGTGTTGTAGA GTGGGTTGATGGGCCTTGGCCTCCTGTTCTTCACATATGTCTGTCCAAGCTATGGGTAAT GTTCCATGAGTGGAGCTATGGAAGGACACTTGACAAGGAGCAGTTTGAGAAGCAGTTGGC CAAGCTTAAGGCTGAAAATGACAAGCTTTCCATGGAGTACATCAAGCTTGTTGAAGATGT ATCCAAGATGTTTGATTGGCAGGATGGTATGGTGGACAAGAAGGTGTATCAGAAACAGGT GGAGGAAGAAGACTTTGTGAAGAAGAAGAAGGAGGTAGAGGAGAAAGCTAGGTTGGAGGT GTAGATGGAAAAGCTTAAACTTGCAAAGGAGAAGAGGTGCATTTTTCACAGACAATCTAA CATTATCAGGAACACTAGGAAGGCTATGAAGGATGTTGAGGTTGATAGAGATCTTCTTAA GAAGGAGAAGGAAAAGCTAGAGCAAGTTGTTGTTGAGATGCTGAAAGATGGGTATGTCAG CAAGGAGAAATTAGAGCAAATCAAGGACATCCTTGAGTCATGAAGTGGTGTGAAATGGTG GTGAAGTACATCCAAGGCCTATATAAATGTGGCCTAACTGTCTCAAATGATTATATGGGG TGTACATTTTGGGGGAATGTGAAGTTAACCTAGGGTTTGTCATTGCATTTGAACTTTAGT GTCTTGTGTAAGAACCATATTTGTTATGTTCTTAAGTATGTTGTAACGGATCTCCAATGC TATGGTATTAAGTGTTTTAATGGATCTTCTATGCTATGGTTTTTAGTAAGTTCTATCATT AATCTTCTATGTTATCTAGAGTGGTATTGGGCTTAGTGGGTCACTAGTCTGTGAGCAAAT GAAAATCCCCTAGGCCTACAAAAACCCAACCCCTCCACCACTGTCAATAAAAAAACCACC CACCCCGACCACCCTTTCACAGTCACTCCAATAGCCGCCACCCATATCAAAC
Protein Sequence (735 aa)
>BART1_0-u39384.001 735 150831_barley_pseudomolecules MDRCRIWWPRQQHQSELESVSARYLLFGWLFPHAGSLDIVVAAFVSEGEILRSFPNLDTF QTAILSSNKTMPTVLQESAAFTILGDCVVHLPRDFEGCCVKQKYHLLRAQVVQAEHADTN QDSSIALGGSLGSEDQDQSENNGKWECDCSVLDGFLDKCKKSVVKRGDWVHFCCKPEKSL KSNLNQIPVLHHLYLDDQKVEINHCHVILYDVPVAGRNHFSLGEDAPYRMKSPFKRPNWI NNLQKKRPFLDLDPIVLALNCSNSARLSVAWKTTNNSSAAHFLFATVIDALVQVAQHFTG IILASVSTIIYIFIQLFRKCLSHVSEHFILQKVFRHSWKNMHLRCSQILYWPIFLQDTSL SSYVNVEYAHKAAIQKHALWSNIIMDLLMGFILGAALLLNMETICSWIFALLHYMTDAVL RSGCVWLMGVPAGFKLNTELAELLGMISLNAIQIYSTLWFMVGGFLRHIIQGLAFSGIIL GFTVPVSIFIDIIQLATLHVTMLQWLISLIYSRQIQTVTSLWRLFRGRKWNPLRQRLDSY DYTVEQHVVGSLLFTPVLLLLPTASIFYIFFSILSSTIICLCIVLETAICIIHSTPYAAV ILWVTRRQRFPAGLMFLPMSSSSVSTDDDALSVEYHSTSLSGERKTDELIHVHSVPLVSE LNCNYNTLGQVIGPHYQKVFNGIALPFCKQLAHGILRGTRIPTTLHLPSSPLPWMHIGIR EYWMLCRRATKWGRN