- Transcript BART1_0-u37558.011
- Transcript IDBART1_0-u37558.011
- Gene IDBART1_0-u37558
Barley RTD
Exon Structure of BART1_0-u37558.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 550827463 | 550826552 | - |
| chr5H | 2 | 550827855 | 550827772 | - |
| chr5H | 3 | 550828824 | 550828472 | - |
| chr5H | 4 | 550829010 | 550828974 | - |
| chr5H | 5 | 550829877 | 550829819 | - |
| chr5H | 6 | 550830171 | 550829993 | - |
| chr5H | 7 | 550830365 | 550830281 | - |
| chr5H | 8 | 550830691 | 550830568 | - |
| chr5H | 9 | 550831089 | 550830928 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.00000739583 | 0 | 0.204795 |
| morex | ETI | 0.631138 | 2.15752 | 3.27916 |
| morex | LEA | 2.57241 | 0.902383 | 0.375791 |
| morex | EPI | 2.05116 | 1.41924 | 4.69844 |
| morex | ROO | 0.214181 | 2.05579 | 0.528067 |
| morex | ROO2 | 2.35249 | 1.365 | 2.90817 |
| morex | NOD | 3.29633 | 3.2946 | 4.78108 |
| morex | RAC | 1.65378 | 4.32715 | 3.37123 |
| morex | INF1 | 2.6098 | 4.47333 | 4.35885 |
| morex | INF2 | 4.27342 | 5.44937 | 6.2518 |
| morex | CAR5 | 2.30335 | 1.26106 | 2.64504 |
| morex | CAR15 | 1.07883 | 0.640367 | 0 |
| morex | LEM | 1.85443 | 2.53669 | 1.16402 |
| morex | LOD | 4.29733 | 2.97716 | 3.22152 |
| morex | PAL | 1.31634 | 1.75111 | 1.59976 |
| morex | SEN | 3.27636 | 2.77703 | 3.4636 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g32940.1 | +1 | 8e-114 | 244 | 159/232 (69%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi4g34656.1.p | +1 | 1e-122 | 267 | 169/233 (73%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1995 bp)
>BART1_0-u37558.011 1995 150831_barley_pseudomolecules CGCTCACCGCGCCGCTCTCGCGGCCGCGCTCTCCGGCTTCCACGCCAAGCTCGCCGACCT CCGCCGCGCGCTCCTCCACCCCTCCACGCCTGGCCCCCGCTCCCGCCTCTGGTGCCCCTT CTGCTCCGCCGACCTCGTCGACCTCGACAGCCGCTTCGCCTGCAATGCGATTTACCATCT CGCGAGCGAGGAGCACCTCAAGGGCGTCAAGGATTTCCTGCGGAAGCATGGGGGCGGGAT GGATCACGTTGATTCATTTAGGATTTCAGAGGATGAGCTTGCGAAGTGGGAGAAGGGCTG TGAGTCATCGATTACAGACGAACAGACATTGACCAAGGGCCTGGTTGGACCATCTCTGGG GCCGTTGAAAGCAATGGGGCCTATTACCCCACTAGTACAGCGTGTTACGGATCTTCCAAC TCCGGAAGTGTTGCTTATTCTGCTCCTTTTGGTACTTCCGGACTGCCCGTCAAACCTTGG GTCACAACACATGAGCATCAGGGTATGCCGAGTACAAACATGTTTCATAGTGCTGATGCA CAAATGAAAGGTGCTCAACCTACTTCCCTCGGAAATGGACCAAATTCACCGGCTTCTTCT TTTGTACATGTCCAACAGGGCCACTCCGGAGGAAAATTCAATCAGGGACTGAAAGCAAAT GTGCATACTGGTGCTCCTCCTCCTTGGTTAGAAGCTAGTGAGCATGATCCAAAGAATGTG TCACTTCTATCTTCTCTGAAAGGAAAATCGAGAAAACTCAACCCAAAGCGTGTTGGAGCT GCATGGGCAGAGAGGAGAAGAGCTGAAATGGAAATGGAAAAGCGAGGTGAAGTTGTTCCA GAAATGCCTGATGCTAGTTGGCTCCCTAATTTTGGTGGTGTCTGGCAATCTGGTTCGCGA AAGGAATCTAGGAAAGAGTTTGAGAAAAATCATAAGCTTCAAGAGAAGAACAATCCTGAG TTACTCCCTGAGATAAAACCATATATCAGCAAAAGGATGCGTGTAAGCTCTAATAAAGAT GGACAACCCGACAGCACTGTAGAATAGTGAGGAGATGTACATCGTCCTGCCAGATGCTTT ATGGAACAGAAATCAGAGGTGCTGCAAGGAAGTCTGCACATGTGCAATTAAATGTGACAT TAGGGTACTCGTAGGCGGTCCTGCTTTTGTGTTTTCCAAATGCAACGGAACCAACTGTTT CTGGCCTTTCCGTCGCTGTGCTGTTTGTTGTGTGTCAATTGTGGTCATGGTTTCCTGTAG GAGTTGTGCAAAACGGTGCAGTGGGCAGCTCTGGATCGTGTCGCGGTTGATGGAAAGTCC AGATCTCTTGGGTGCATGATTGAAGAGATCATCATCTGTAGTATGACAGCATGTGCAATG CCAATCAACCCCAGTGAACAAAAGGCGGGAACCCTTTCCAGGAAGAGTTAGCTGGCTTGT AGTGGTAAAAAAAACTTTTCATTATGTTGGTTGGTGCCTTGTTGGTCGTTTGATCGAGCG TGGATTTATTTGCTCCTGATGAGGTGATGACAGGGAGGGTCTGGAACATGGATGATTGAT GGTTGCAGCTGAAGGGGTCGCAGTTGGAGCAAACTGAGAGCCTAGCCCCTGAGCTTGAGC TTGTTTGTCTGATGACATGTGAAGAGACCACGCCATTTTACTATCCTACCTGAGCTTTGG CATCTACTCCTTCCGTACCAAAATGTAAGACGTTGTTGCATTCAAATTTGAAGTGCAAAA GCAAAAAACGTCTTATGTTTTGCTACAGAGGTAGTAATTTTTTACGGGAAGATTGTTTTG TTTTAAGGTTGTTTGCCAGTTGGCCTCTAGCCTGAAGGTTATTTTTCTTACTAGATAACC CAAACGTGAGAGAATCAAGAGCATTTAGGACGGGAAGATTACATTACAAAGAGCATTCGT GTGTTGTTACCCAGTGCATCGGTCAGGTCGCTTTGCGTTTAAAGTCGGATCATCAGTGTG AATGTAATCTCGAGG
Protein Sequence (181 aa)
>BART1_0-u37558.011 181 150831_barley_pseudomolecules AHRAALAAALSGFHAKLADLRRALLHPSTPGPRSRLWCPFCSADLVDLDSRFACNAIYHL ASEEHLKGVKDFLRKHGGGMDHVDSFRISEDELAKWEKGCESSITDEQTLTKGLVGPSLG PLKAMGPITPLVQRVTDLPTPEVLLILLLLVLPDCPSNLGSQHMSIRVCRVQTCFIVLMH K