Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU5Hr1G07633093.2--5233-384Containing




Transcripts from Gene BART1_0-u37558

TranscriptLength(bp)Description
BART1_0-u37558.00125332533 bp MSTRG.37558.1 MSTRG.37558
BART1_0-u37558.00229282928 bp MSTRG.37558.2 MSTRG.37558
BART1_0-u37558.00329112911 bp MSTRG.37558.3 MSTRG.37558
BART1_0-u37558.00423872387 bp MSTRG.37558.4 MSTRG.37558
BART1_0-u37558.00524482448 bp MSTRG.37558.5 MSTRG.37558
BART1_0-u37558.00622092209 bp MSTRG.37558.6 MSTRG.37558
BART1_0-u37558.00719841984 bp MSTRG.37558.7 MSTRG.37558
BART1_0-u37558.00822092209 bp MSTRG.37558.8 MSTRG.37558
BART1_0-u37558.00920122012 bp MSTRG.37558.9 MSTRG.37558
BART1_0-u37558.01020212021 bp MSTRG.37558.10 MSTRG.37558
BART1_0-u37558.01119951995 bp MSTRG.37558.11 MSTRG.37558
BART1_0-u37558.01216881688 bp MSTRG.37558.12 MSTRG.37558



Exon Structure of BART1_0-u37558


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g32940.1 +2 5e-133 251 128/157 (82%) protein|expressed protein
TAIR PP10 AT4G24900 @ ARAPORT
AT4G24900.1 @ TAIR
+2 8e-35 138 66/128 (52%) Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421
BRACH PP3 Bradi4g34656.1.p +1 6e-140 267 169/233 (73%) pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons