- Gene BART1_0-u37558
- Gene IDBART1_0-u37558
- Location chr5H: 550825815 - 550831431
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU5Hr1G076330 | 93.2 | - | - | 5233 | -384 | Containing |
Transcripts from Gene BART1_0-u37558
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u37558.001 | 2533 | 2533 bp MSTRG.37558.1 MSTRG.37558 |
BART1_0-u37558.002 | 2928 | 2928 bp MSTRG.37558.2 MSTRG.37558 |
BART1_0-u37558.003 | 2911 | 2911 bp MSTRG.37558.3 MSTRG.37558 |
BART1_0-u37558.004 | 2387 | 2387 bp MSTRG.37558.4 MSTRG.37558 |
BART1_0-u37558.005 | 2448 | 2448 bp MSTRG.37558.5 MSTRG.37558 |
BART1_0-u37558.006 | 2209 | 2209 bp MSTRG.37558.6 MSTRG.37558 |
BART1_0-u37558.007 | 1984 | 1984 bp MSTRG.37558.7 MSTRG.37558 |
BART1_0-u37558.008 | 2209 | 2209 bp MSTRG.37558.8 MSTRG.37558 |
BART1_0-u37558.009 | 2012 | 2012 bp MSTRG.37558.9 MSTRG.37558 |
BART1_0-u37558.010 | 2021 | 2021 bp MSTRG.37558.10 MSTRG.37558 |
BART1_0-u37558.011 | 1995 | 1995 bp MSTRG.37558.11 MSTRG.37558 |
BART1_0-u37558.012 | 1688 | 1688 bp MSTRG.37558.12 MSTRG.37558 |
Exon Structure of BART1_0-u37558
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os09g32940.1 | +2 | 5e-133 | 251 | 128/157 (82%) | protein|expressed protein |
TAIR PP10 | AT4G24900 @ ARAPORT AT4G24900.1 @ TAIR |
+2 | 8e-35 | 138 | 66/128 (52%) | Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421 |
BRACH PP3 | Bradi4g34656.1.p | +1 | 6e-140 | 267 | 169/233 (73%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
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Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons