- Transcript BART1_0-u37558.010
- Transcript IDBART1_0-u37558.010
- Gene IDBART1_0-u37558
Barley RTD
Exon Structure of BART1_0-u37558.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 550826692 | 550826531 | - |
| chr5H | 2 | 550827463 | 550826843 | - |
| chr5H | 3 | 550827855 | 550827772 | - |
| chr5H | 4 | 550828824 | 550828472 | - |
| chr5H | 5 | 550829010 | 550828974 | - |
| chr5H | 6 | 550829877 | 550829819 | - |
| chr5H | 7 | 550830171 | 550829993 | - |
| chr5H | 8 | 550830365 | 550830281 | - |
| chr5H | 9 | 550831008 | 550830568 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 1.31102 | 1.83102 |
| morex | ETI | 0.438159 | 1.41261 | 0.634613 |
| morex | LEA | 0.414006 | 2.11831 | 1.6986 |
| morex | EPI | 1.79105 | 2.24959 | 1.54275 |
| morex | ROO | 0 | 0.841719 | 0.852092 |
| morex | ROO2 | 0.794641 | 0.655265 | 0.85423 |
| morex | NOD | 0.382609 | 1.12953 | 0.630642 |
| morex | RAC | 0.609055 | 0.148152 | 0.470808 |
| morex | INF1 | 4.8107 | 5.65811 | 1.7998 |
| morex | INF2 | 7.15006 | 4.68023 | 6.59463 |
| morex | CAR5 | 1.16301 | 2.10486 | 1.80949 |
| morex | CAR15 | 0.432068 | 1.35794 | 2.03146 |
| morex | LEM | 0.331578 | 0.576329 | 0.254768 |
| morex | LOD | 0.542136 | 0.712984 | 0.585489 |
| morex | PAL | 1.35025 | 0.366119 | 0.275502 |
| morex | SEN | 0.417113 | 1.1533 | 0.318759 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g32940.1 | +3 | 4e-94 | 244 | 159/232 (69%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi4g34656.1.p | +3 | 9e-102 | 267 | 169/233 (73%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2021 bp)
>BART1_0-u37558.010 2021 150831_barley_pseudomolecules CTCCACGCCTGGCCCCCGCTCCCGCCTCTGGTGCCCCTTCTGCTCCGCCGACCTCGTCGA CCTCGACAGCCGCTTCGCCTGGTAGCTTCCGCCTACTCCTCATGGCCGTCCCTCTACACC TAGGGTTTTTTGCTTTAGATGCACCGTTTCTAGCCACAGTGGCTTGGACTTTGGATGGCC CAATAGAACATGAGATCGAGCGCTGGTAGCACATCGGGATCAGGGGTTGTTGGAAGCATA GTAGAGTTTTTAGAAATACTGTAGACATGTCGACTTTGCGTGAAAGATATAAGCCCTGTT TTACTCTGTTGCAGTAGCAATGCGATTTACCATCTCGCGAGCGAGGAGCACCTCAAGGGC GTCAAGGATTTCCTGCGGAAGCATGGGGGCGGGATGGATCACGTTGATTCATTTAGGATT TCAGAGGATGAGCTTGCGAAGTGGGAGAAGGGCTGTGAGTCATCGATTACAGACGAACAG ACATTGACCAAGGGCCTGGTTGGACCATCTCTGGGGCCGTTGAAAGCAATGGGGCCTATT ACCCCACTAGTACAGCGTGTTACGGATCTTCCAACTCCGGAAGTGTTGCTTATTCTGCTC CTTTTGGTACTTCCGGACTGCCCGTCAAACCTTGGGTCACAACACATGAGCATCAGGGTA TGCCGAGTACAAACATGTTTCATAGTGCTGATGCACAAATGAAAGGTGCTCAACCTACTT CCCTCGGAAATGGACCAAATTCACCGGCTTCTTCTTTTGTACATGTCCAACAGGGCCACT CCGGAGGAAAATTCAATCAGGGACTGAAAGCAAATGTGCATACTGGTGCTCCTCCTCCTT GGTTAGAAGCTAGTGAGCATGATCCAAAGAATGTGTCACTTCTATCTTCTCTGAAAGGAA AATCGAGAAAACTCAACCCAAAGCGTGTTGGAGCTGCATGGGCAGAGAGGAGAAGAGCTG AAATGGAAATGGAAAAGCGAGGTGAAGTTGTTCCAGAAATGCCTGATGCTAGTTGGCTCC CTAATTTTGGTGGTGTCTGGCAATCTGGTTCGCGAAAGGAATCTAGGAAAGAGTTTGAGA AAAATCATAAGCTTCAAGAGAAGAACAATCCTGAGTTACTCCCTGAGATAAAACCATATA TCAGCAAAAGGATGCGTGTAAGCTCTAATAAAGATGGACAACCCGACAGCACTGTAGAAT AGTGAGGAGATGTACATCGTCCTGCCAGATGCTTTATGGAACAGAAATCAGAGGTGCTGC AAGGAAGTCTGCACATGTGCAATTAAATGTGACATTAGGGTACTCGTAGGCGGTCCTGCT TTTGTGTTTTCCAAATGCAACGGAACCAACTGTTTCTGGCCTTTCCGTCGCTGTGCTGTT TGTTGTGTGTCAATTGTGGTCATGGTTTCCTGTAGGAGTTGTGCAAAACGGTGCAGTGGG CAGCTCTGGATCGTGTCGCGGTTGATGGAAAGTCCAGATCTCTTGGGTGCATGATTGAAG AGATCATCATCTGTAGTATGACAGCATGTGCAATGCCAATCAACCCCAGTGAACAAAAGG CGGGAACCCTTTCCAGGAAGAGTTAGCTGGCTTGTAGTGGTAAAAAAAACTTTTCATTAT GTTGGTTGGTGCCTTGTTGGTCGTTTGATCGAGCGTGGATTTATTTGCTCCTGATGAGGT GATGACAGGGAGGGTCTGGAACATGGATGATTGATGGTTGCAGCTGAAGGGGTCGCAGTT GGAGCAAACTGAGAGCCTAGCCCCTGAGCTTGAGCTTGTTTGTCTGATGACATGTGAAGA GACCACGCCATTTTACTATCCTACCTGAGCTTTGGCATCTACTCCTTCCGTACCAAAATA TAACCCAAACGTGAGAGAATCAAGAGCATTTAGGACGGGAAGATTACATTACAAAGAGCA TTCGTGTGTTGTTACCCAGTGCATCGGTCAGGTCGCTTTGCGTTTAAAGTCGGATCATCA GTGTGAATGTAATCTCGAGGAAGAGTGGTGGTGGTTGTGGG
Protein Sequence (180 aa)
>BART1_0-u37558.010 180 150831_barley_pseudomolecules MPSTNMFHSADAQMKGAQPTSLGNGPNSPASSFVHVQQGHSGGKFNQGLKANVHTGAPPP WLEASEHDPKNVSLLSSLKGKSRKLNPKRVGAAWAERRRAEMEMEKRGEVVPEMPDASWL PNFGGVWQSGSRKESRKEFEKNHKLQEKNNPELLPEIKPYISKRMRVSSNKDGQPDSTVE