- Transcript BART1_0-u37558.007
- Transcript IDBART1_0-u37558.007
- Gene IDBART1_0-u37558
Barley RTD
Exon Structure of BART1_0-u37558.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 550826692 | 550826510 | - |
| chr5H | 2 | 550827463 | 550826777 | - |
| chr5H | 3 | 550827855 | 550827772 | - |
| chr5H | 4 | 550828824 | 550828472 | - |
| chr5H | 5 | 550829010 | 550828974 | - |
| chr5H | 6 | 550829877 | 550829819 | - |
| chr5H | 7 | 550830171 | 550829993 | - |
| chr5H | 8 | 550830365 | 550830281 | - |
| chr5H | 9 | 550830694 | 550830568 | - |
| chr5H | 10 | 550831117 | 550830928 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 2.50011 | 0 | 0.74477 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.511991 | 0 | 0 |
| morex | ROO2 | 0.000560863 | 0 | 0 |
| morex | NOD | 0.0211019 | 0 | 0.0597891 |
| morex | RAC | 0 | 0.0251136 | 0.982165 |
| morex | INF1 | 0 | 0.00000426939 | 0.000000530443 |
| morex | INF2 | 0.00000155745 | 0.000120428 | 0.00000000641716 |
| morex | CAR5 | 0.903041 | 0 | 0 |
| morex | CAR15 | 0.000000473164 | 0 | 0 |
| morex | LEM | 0.558762 | 0 | 0.0044103 |
| morex | LOD | 0 | 0 | 0.0118873 |
| morex | PAL | 0.00000169046 | 0 | 0 |
| morex | SEN | 0.699738 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g32940.1 | +2 | 7e-122 | 244 | 159/232 (69%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi4g34656.1.p | +2 | 1e-129 | 267 | 169/233 (73%) | pacid=32784850 transcript=Bradi4g34656.1 locus=Bradi4g34656 ID=Bradi4g34656.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1984 bp)
>BART1_0-u37558.007 1984 150831_barley_pseudomolecules ACCAGGGCCGGCGCCACCGCTACTTCCCCGCTCACCGCGCCGCTCTCGCGGCCGCGCTCT CCGGCTTCCACGCCAAGCTCGCCGACCTCCGCCGCGCGCTCCTCCACCCCTCCACGCCTG GCCCCCGCTCCCGCCTCTGGTGCCCCTTCTGCTCCGCCGACCTCGTCGACCTCGACAGCC GCTTCGCCTGTAGCAATGCGATTTACCATCTCGCGAGCGAGGAGCACCTCAAGGGCGTCA AGGATTTCCTGCGGAAGCATGGGGGCGGGATGGATCACGTTGATTCATTTAGGATTTCAG AGGATGAGCTTGCGAAGTGGGAGAAGGGCTGTGAGTCATCGATTACAGACGAACAGACAT TGACCAAGGGCCTGGTTGGACCATCTCTGGGGCCGTTGAAAGCAATGGGGCCTATTACCC CACTAGTACAGCGTGTTACGGATCTTCCAACTCCGGAAGTGTTGCTTATTCTGCTCCTTT TGGTACTTCCGGACTGCCCGTCAAACCTTGGGTCACAACACATGAGCATCAGGGTATGCC GAGTACAAACATGTTTCATAGTGCTGATGCACAAATGAAAGGTGCTCAACCTACTTCCCT CGGAAATGGACCAAATTCACCGGCTTCTTCTTTTGTACATGTCCAACAGGGCCACTCCGG AGGAAAATTCAATCAGGGACTGAAAGCAAATGTGCATACTGGTGCTCCTCCTCCTTGGTT AGAAGCTAGTGAGCATGATCCAAAGAATGTGTCACTTCTATCTTCTCTGAAAGGAAAATC GAGAAAACTCAACCCAAAGCGTGTTGGAGCTGCATGGGCAGAGAGGAGAAGAGCTGAAAT GGAAATGGAAAAGCGAGGTGAAGTTGTTCCAGAAATGCCTGATGCTAGTTGGCTCCCTAA TTTTGGTGGTGTCTGGCAATCTGGTTCGCGAAAGGAATCTAGGAAAGAGTTTGAGAAAAA TCATAAGCTTCAAGAGAAGAACAATCCTGAGTTACTCCCTGAGATAAAACCATATATCAG CAAAAGGATGCGTGTAAGCTCTAATAAAGATGGACAACCCGACAGCACTGTAGAATAGTG AGGAGATGTACATCGTCCTGCCAGATGCTTTATGGAACAGAAATCAGAGGTGCTGCAAGG AAGTCTGCACATGTGCAATTAAATGTGACATTAGGGTACTCGTAGGCGGTCCTGCTTTTG TGTTTTCCAAATGCAACGGAACCAACTGTTTCTGGCCTTTCCGTCGCTGTGCTGTTTGTT GTGTGTCAATTGTGGTCATGGTTTCCTGTAGGAGTTGTGCAAAACGGTGCAGTGGGCAGC TCTGGATCGTGTCGCGGTTGATGGAAAGTCCAGATCTCTTGGGTGCATGATTGAAGAGAT CATCATCTGTAGTATGACAGCATGTGCAATGCCAATCAACCCCAGTGAACAAAAGGCGGG AACCCTTTCCAGGAAGAGTTAGCTGGCTTGTAGTGGTAAAAAAAACTTTTCATTATGTTG GTTGGTGCCTTGTTGGTCGTTTGATCGAGCGTGGATTTATTTGCTCCTGATGAGGTGATG ACAGGGAGGGTCTGGAACATGGATGATTGATGGTTGCAGCTGAAGGGGTCGCAGTTGGAG CAAACTGAGAGCCTAGCCCCTGAGCTTGAGCTTGTTTGTCTGATGACATGTGAAGAGACC ACGCCATTTTACTATCCTACCTGAGCTTTGGCATCTACTCCTTCCGTACCAAAATGTAAG ACGTTGTTGCATTCAAATTTGAAGTGCAAAAGCAAAAAACGTCTTATGTTTTGCTACAGA GATAACCCAAACGTGAGAGAATCAAGAGCATTTAGGACGGGAAGATTACATTACAAAGAG CATTCGTGTGTTGTTACCCAGTGCATCGGTCAGGTCGCTTTGCGTTTAAAGTCGGATCAT CAGTGTGAATGTAATCTCGAGGAAGAGTGGTGGTGGTTGTGGGCACGGCCATTGTTTGTT GTCT
Protein Sequence (191 aa)
>BART1_0-u37558.007 191 150831_barley_pseudomolecules QGRRHRYFPAHRAALAAALSGFHAKLADLRRALLHPSTPGPRSRLWCPFCSADLVDLDSR FACSNAIYHLASEEHLKGVKDFLRKHGGGMDHVDSFRISEDELAKWEKGCESSITDEQTL TKGLVGPSLGPLKAMGPITPLVQRVTDLPTPEVLLILLLLVLPDCPSNLGSQHMSIRVCR VQTCFIVLMHK