- Transcript BART1_0-u36905.008
- Transcript IDBART1_0-u36905.008
- Gene IDBART1_0-u36905
Barley RTD
Exon Structure of BART1_0-u36905.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 516499045 | 516498893 | + |
| chr5H | 2 | 516499417 | 516499330 | + |
| chr5H | 3 | 516499628 | 516499533 | + |
| chr5H | 4 | 516500536 | 516499724 | + |
| chr5H | 5 | 516501316 | 516500965 | + |
| chr5H | 6 | 516501625 | 516501544 | + |
| chr5H | 7 | 516502467 | 516502239 | + |
| chr5H | 8 | 516504978 | 516504180 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.84397 | 0 | 0 |
| morex | ETI | 4.86825 | 1.77499 | 8.45233 |
| morex | LEA | 4.93251 | 0.247988 | 0.393627 |
| morex | EPI | 2.05124 | 1.20326 | 1.61118 |
| morex | ROO | 0.00000000195741 | 0.39138 | 0.0000155761 |
| morex | ROO2 | 4.46463 | 5.59031 | 4.08942 |
| morex | NOD | 1.01028 | 4.81631 | 4.26295 |
| morex | RAC | 26.7832 | 29.5947 | 28.4549 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 1.88694 | 0.770713 |
| morex | CAR5 | 1.59289 | 5.55846 | 3.64535 |
| morex | CAR15 | 1.4253 | 0.997742 | 1.93795 |
| morex | LEM | 7.80935 | 5.22636 | 5.24417 |
| morex | LOD | 14.5197 | 14.5721 | 18.3171 |
| morex | PAL | 17.7563 | 10.907 | 13.2694 |
| morex | SEN | 1.2355 | 0.602654 | 0.266945 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g28300.2 | +1 | 0.0 | 598 | 381/565 (67%) | protein|remorin C-terminal domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g49050.1.p | +1 | 0.0 | 730 | 448/558 (80%) | pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2612 bp)
>BART1_0-u36905.008 2612 150831_barley_pseudomolecules CACTCTCGCCCCCCCTCTCCTCCATCCATTGCCGCGTCGCCTGGCTTCTATTAAGTATCC GCGCATAGGAATCTCTCACCATTGCGAGCTGTGGCAATGGCATGGGCATGGCGCCATGCA GATCTAGCCAGAGCGCACCATGGCCTGTCGCAGCCTTTGGCCGGATTCGTGCGCGCGGAT GGCGACATGGAAGGCACAGATCTGGAGACAGACGGGCTGGCCGCCACTTCCTCCTCCAGC GCCTCCGCAGCGTTCACGGAGCCGCACGACGACGAGGAGGCGCAGTCGCGGCAAGAACCG GCCAAGAGTCCGGCGGGCACTGCCACTGCCATCCGAGAATGCCAGAGCCAGCGGCGGTGC CGGACAGACGCGGTTTACCTGCACGGTAGGAAGGGGCTCAAGCAGCGGCCGGCCTCGCTC GACTTCGGCAGCGCCGGGTTCAGCAGCGGGACTCCGTTTTCTCCGGGCTTTGTGGTGGGA GGCGCGGGGTTTGTGAGCAAGGGACTTGTGTCATCACAGATCAGCTCAGGGGTGTTTCCG AGTCCCGGCACGCCGAGCTACCCGCGGCGGCACCGGCCATCGGCCTTGGGGTACCAGAAG GGGTGGAGCTCGGAGAGAGTGCCCCTTCCTTCCAAAGGTAACAACACTAGGAGGTACCCA GGCAGCAGCATGGCATTTCCTCTCAACAACAGGAGGACACTGCCCTCAAAATGGGAGGAT GCAGAGAGGTGGATCTTCAGTCCCAAGTCTAACGCCGGCGATGCGCGTGAGAAGACCGCC ACATTGCCCCATGCTCGACGGCCGAAGGCCAAAAGTGGTCCTCTTGGGCCTCCTGGAAGA CTTGGTGGACAGTATTCATCTGTATCTTCATCCGTGTCTTTGTTTGACAGTGGGAGAGTT GGGCATTTAGCAGCAAACTCACCTTTCTTGGCGGGAGTACTCATACCTGAACATTATGGT GGGGCGAAAAGTAATGTCCGGAGGTACACGAGTGGAACAGCTGGTGACGAATTTGGTATT GGCATAGTTGGCAGGTCTTCTCTAGCAGCTATCGGGTCGCCTGCTATCCCGTCTACGACG GTGCGCCGACGACTAGATACTGCAATTGAGTCATCTGTGTCATTGCCTAGCACTCGAGAA TCTGTACAAGGCGAAGAGGCTGAGTTTGTAGAAGATTCAGCCCCTGTCGCTACCCCTATA ATTTCAAGGAAGGATACCGCGACTCAAACTAGCCCAGATCTAAGTAGGTCTTCTTCGCCC AGCGCCAGGCCTTCATTTGTTCGCTCGTTTTCAATGCAACAAGCCAAGGAGGAGAGCTGT TTCTCTGATCTTGAGATCAGGGATGTGCAGATGGATGACCGAGTGAGTCTTACTAGATGG TCCAAGAAGCATGTAACACAGGCCTCTAACAAGAATTCTACAAATATCTTAGAGTGGAAC AGAAAAACGGTGGACTCTAAATCTTCTTCCTGGGAATCAACTGAAACAAAGTGCACATTA AAGGTTGAGAGAGAAGAAGCAAAACTTACTGCTTGGGAGAATCTTCAAAAAGCGAAAGCT GAGGCTGCAATTCAGAAGCTAGTGATGAAACTCGAGAAGAAACGATCATTTTCTCTGGAC AGAATTTTGAACACCCTCAGGTCTGCTCAAAGAAAAGCACAAGGGATGCGTGATGCAGCA ACAGCAAGCCAAGATGAACATGTTTGCAGAAAGGCCAAAAAGACATCACACGTTACAAAG AATGGCCAGATCAGATCTCTGAGTGGCTGTTTTACTTGCCATGCTTTCTAGTATCATGCA ATCCCGCTACTGAGGATCTGGAGGACCTAGGTTCACTCTTCAGGCCCTTCAGCAGGGAAG TCCGGGTGAAGTTCAGACAGAGACTCACTCTGTGAGTGAAGAATCCAAACAATCCTCAAC TCACCCCCGTCGCATTTTCAGAAGAATATGCCGCTTGCGGCCTGAGCAGGGACCATGCGT GCGCTGGCTCTCACCATATGGCTCTGCTCATCTGCGCAATCTGCCAAGGGGACAAGAGAA AATGGAGGCACCGAGGAAAAGGAGCGATGGTGCCTCTGCGTCACCACATGCACCGACCCG GCAGGCCAGCAGCTAGCACAATGGTAAACAGGTGAAGGCCTCCTTTATCGTTGGCCTTTG CTGGTCCTGTAGTTGCTTCAGGTGTAGCCCATTTGGGTGGGATTGGATGTACGCCACCAT AGAACATTATTAGTATTATTATTTTGCTGCAATCGTTGCTGCTCTCGTGTCTTTACTTTG AGCTGTAGGAGATGCTTCCTCAGGAGGGAAAAAAAAGGTGAACCAGATAAGGCGTTTTGC AGCTTTCCAGCGTTCAGATAGAAAGCAAGCGTCGGGATAGAAAGTGTCCTACGACCACGA AGTGAGGTTCCTCCCGTGACTTGACCCTCGTGCACCCTCACCCGTAGGCCGAAAGAAAGC AACGTTATGCAGGTCCAAACAAAACCGGATGCTTTTTGGCTGACAAGTTACCACATGATG TCACGTCACAAACAAAATCGATTGATTGTCAGTATAATTCACCTGTGGCCGCCCACGAGT TAGAAATGACAAGGTGGCATGACACTTTCTTT
Protein Sequence (564 aa)
>BART1_0-u36905.008 564 150831_barley_pseudomolecules MAWAWRHADLARAHHGLSQPLAGFVRADGDMEGTDLETDGLAATSSSSASAAFTEPHDDE EAQSRQEPAKSPAGTATAIRECQSQRRCRTDAVYLHGRKGLKQRPASLDFGSAGFSSGTP FSPGFVVGGAGFVSKGLVSSQISSGVFPSPGTPSYPRRHRPSALGYQKGWSSERVPLPSK GNNTRRYPGSSMAFPLNNRRTLPSKWEDAERWIFSPKSNAGDAREKTATLPHARRPKAKS GPLGPPGRLGGQYSSVSSSVSLFDSGRVGHLAANSPFLAGVLIPEHYGGAKSNVRRYTSG TAGDEFGIGIVGRSSLAAIGSPAIPSTTVRRRLDTAIESSVSLPSTRESVQGEEAEFVED SAPVATPIISRKDTATQTSPDLSRSSSPSARPSFVRSFSMQQAKEESCFSDLEIRDVQMD DRVSLTRWSKKHVTQASNKNSTNILEWNRKTVDSKSSSWESTETKCTLKVEREEAKLTAW ENLQKAKAEAAIQKLVMKLEKKRSFSLDRILNTLRSAQRKAQGMRDAATASQDEHVCRKA KKTSHVTKNGQIRSLSGCFTCHAF