Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU5Hr1G06820093.6++6855-467Containing




Transcripts from Gene BART1_0-u36905

TranscriptLength(bp)Description
BART1_0-u36905.00136763676 bp MSTRG.36905.1 MSTRG.36905
BART1_0-u36905.00236183618 bp MSTRG.36905.2 MSTRG.36905
BART1_0-u36905.00334723472 bp MSTRG.36905.3 MSTRG.36905
BART1_0-u36905.00438613861 bp MSTRG.36905.4 MSTRG.36905
BART1_0-u36905.00538723872 bp MSTRG.36905.5 MSTRG.36905
BART1_0-u36905.00635003500 bp MSTRG.36905.6 MSTRG.36905
BART1_0-u36905.00731463146 bp MSTRG.36905.7 MSTRG.36905
BART1_0-u36905.00826122612 bp MSTRG.36905.8 MSTRG.36905
BART1_0-u36905.00927322732 bp MSTRG.36905.9 MSTRG.36905
BART1_0-u36905.01023132313 bp MSTRG.36905.10 MSTRG.36905



Exon Structure of BART1_0-u36905


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os09g28300.2 +1 9e-114 368 235/348 (68%) protein|remorin C-terminal domain containing protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g49050.1.p +1 2e-145 454 275/343 (80%) pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0016740transferase activity



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons