- Transcript BART1_0-u36905.005
- Transcript IDBART1_0-u36905.005
- Gene IDBART1_0-u36905
Barley RTD
Exon Structure of BART1_0-u36905.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 516499417 | 516498328 | + |
| chr5H | 2 | 516499628 | 516499542 | + |
| chr5H | 3 | 516500786 | 516499724 | + |
| chr5H | 4 | 516501316 | 516500965 | + |
| chr5H | 5 | 516501625 | 516501544 | + |
| chr5H | 6 | 516502467 | 516502239 | + |
| chr5H | 7 | 516505148 | 516504180 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.15119 | 2.82535 | 2.05899 |
| morex | ETI | 0.81946 | 0.666531 | 1.73026 |
| morex | LEA | 4.35619 | 0.902233 | 0.613545 |
| morex | EPI | 0.203493 | 0.0702849 | 0.439841 |
| morex | ROO | 0 | 0.313851 | 0 |
| morex | ROO2 | 1.25979 | 0.9823 | 0.767002 |
| morex | NOD | 0.553152 | 0.327056 | 0.260529 |
| morex | RAC | 2.55398 | 3.2462 | 3.70382 |
| morex | INF1 | 3.64846 | 2.8108 | 2.07527 |
| morex | INF2 | 7.07541 | 5.88102 | 3.83037 |
| morex | CAR5 | 3.41905 | 4.24518 | 3.94136 |
| morex | CAR15 | 0.530432 | 0.101232 | 0.318859 |
| morex | LEM | 0.809179 | 0.454731 | 0.239349 |
| morex | LOD | 1.75787 | 1.2646 | 2.33224 |
| morex | PAL | 2.08495 | 1.2982 | 2.14398 |
| morex | SEN | 0 | 0.279317 | 0.131097 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g28300.2 | +1 | 9e-114 | 368 | 235/348 (68%) | protein|remorin C-terminal domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g49050.1.p | +1 | 2e-145 | 454 | 275/343 (80%) | pacid=32772094 transcript=Bradi2g49050.1 locus=Bradi2g49050 ID=Bradi2g49050.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3872 bp)
>BART1_0-u36905.005 3872 150831_barley_pseudomolecules GGGCAGAAGAAACAAGAAGCGCGACACCGACATGGACGGGGGCGCCGATCGGGGGGCAAC AAAACGAGCACAGAAAATGCCCGTTGGTTTCAGCGCCGCGCACGTTGCCTCGCCTCGCGG CCGGCCTCGAGATGCCGGGCGTACGCCGCCCACGTCCCAATCCAATCCACCCCGCCCGCC TCGCTGCCTGACACGTCTATTAAAATGCCGAGACTTGTCGCTCTTCCATACCCGCCACTC TTAATGGGCACCGCCGGTTGAGGGGGAGAGCGCAGCGAACTCACTGACGAGCCGGGCGAG CGGCTGGTGGGATTCTTGCTTCCCTTCTTGTTTCTGGGACTGAGAATGCGGGGCGCCGGT GATTGCGGGCTGGAGTTCCGGGGCGTGATGGGGGAGGAGGAGGAGGAGGAGGCCGCGTCG GCGTCGGCGTCGGAGAGGGCAATGCGGCGGCGGCGGCGGTGGGGAGCGGAGGCGGACGAC GGCTACTCGACGAGCTCCACGGGCGGCCGCGGCGGGAGCAGCGGCAGCGGCAGCGGCTCC TTCGGCTGCGACTCGGTTGGTCTCGCACTCTCGCCCCCCCTCTCCTCCATCCATTGCCGC GTCGCCTGGCTTCTATTAAGTATCCGCGCATAGGAATCTCTCACCATTGCGAGCTGTGGC AATGGCATGGGCATGGCGCCATGCAGATCTAGCCAGAGCGCACCATGGCCTGTCGCAGGT GACCACAGGGGCCTTTCCAGAAAGTGGATGGTAAAACCCAGGAATGACATGATTAGCAAG TGAATCTAGCGATCTAAAACAGACAAAGCCGGAGGGCCCGAGGCCTGAGGTCGGAATCGG ATAGGCGCCATCATCGCCATCTTGATTCTTGCAGCAAGCGAAAAAGGAGCGGAGGGGGGC ACCACCCACACCAACACCAACACCACACACCCTGGGATTCTCCAGCTTTACAAGATTAAC TTTTTAATCGGTGGTGCTAAGGTGCTTCATGGTTGGCTGCAGCCTTTGGCCGGATTCGTG CGCGCGGATGGCGACATGGAAGGCACAGATCTGGAGACAGACGGGCTGGCCGCCACTTCC TCCTCCAGCGCGTTCACGGAGCCGCACGACGACGAGGAGGCGCAGTCGCGGCAAGAACCG GCCAAGAGTCCGGCGGGCACTGCCACTGCCATCCGAGAATGCCAGAGCCAGCGGCGGTGC CGGACAGACGCGGTTTACCTGCACGGTAGGAAGGGGCTCAAGCAGCGGCCGGCCTCGCTC GACTTCGGCAGCGCCGGGTTCAGCAGCGGGACTCCGTTTTCTCCGGGCTTTGTGGTGGGA GGCGCGGGGTTTGTGAGCAAGGGACTTGTGTCATCACAGATCAGCTCAGGGGTGTTTCCG AGTCCCGGCACGCCGAGCTACCCGCGGCGGCACCGGCCATCGGCCTTGGGGTACCAGAAG GGGTGGAGCTCGGAGAGAGTGCCCCTTCCTTCCAAAGGTAACAACACTAGGAGGTACCCA GGCAGCAGCATGGCATTTCCTCTCAACAACAGGAGGACACTGCCCTCAAAATGGGAGGAT GCAGAGAGGTGGATCTTCAGTCCCAAGTCTAACGCCGGCGATGCGCGTGAGAAGACCGCC ACATTGCCCCATGCTCGACGGCCGAAGGCCAAAAGTGGTCCTCTTGGGCCTCCTGGAAGA CTTGGTGGACAGTATTCATCTGTATCTTCATCCGTGTCTTTGTTTGACAGTGGGAGAGTT GGGCATTTAGCAGCAAACTCACCTTTCTTGGCGGGAGTACTCATACCTGAACATTATGGT GGGGCGAAAAGTAATGTCCGGAGGTACACGAGTGGAACAGCTGGTGACGAATTTGGTATT GGCATAGTTGGCAGGTCTTCTCTAGCAGCTATCGGGTCGCCTGCTATCCCGTCTACGACG GTGCGCCGACGACTAGATACTGCAATTGAGTCATCTGTGTCATTGCCTAGCACTCGAGAA TCTGTACAAGGTATTAAGAAATTGCTATCCTTTGTTTTTAGCCTATTGCTTGGTGTTGAC TTATGGGTCTATAGAGTATAAAAGTGTAGAGGGCAACCCTCCATTTAAGGTTTGCGGTAG TCTCTGGTTGCTAACTTGTGGTTCTCTCTGTTTGAGGTTTATGGTAGTCTATTAGCTTGT GGTAGTTTCTCTGTTTGAGGCAGTCTCTCGGATTTACGGGTCTATGAAGTATAAAGCATT GTCAAATTGTGAAGCTCCTCGCGAAGAGGCTGAGTTTGTAGAAGATTCAGCCCCTGTCGC TACCCCTATAATTTCAAGGAAGGATACCGCGACTCAAACTAGCCCAGATCTAAGTAGGTC TTCTTCGCCCAGCGCCAGGCCTTCATTTGTTCGCTCGTTTTCAATGCAACAAGCCAAGGA GGAGAGCTGTTTCTCTGATCTTGAGATCAGGGATGTGCAGATGGATGACCGAGTGAGTCT TACTAGATGGTCCAAGAAGCATGTAACACAGGCCTCTAACAAGAATTCTACAAATATCTT AGAGTGGAACAGAAAAACGGTGGACTCTAAATCTTCTTCCTGGGAATCAACTGAAACAAA GTGCACATTAAAGGTTGAGAGAGAAGAAGCAAAACTTACTGCTTGGGAGAATCTTCAAAA AGCGAAAGCTGAGGCTGCAATTCAGAAGCTAGTGATGAAACTCGAGAAGAAACGATCATT TTCTCTGGACAGAATTTTGAACACCCTCAGGTCTGCTCAAAGAAAAGCACAAGGGATGCG TGATGCAGCAACAGCAAGCCAAGATGAACATGTTTGCAGAAAGGCCAAAAAGACATCACA CGTTACAAAGAATGGCCAGATCAGATCTCTGAGTGGCTGTTTTACTTGCCATGCTTTCTA GTATCATGCAATCCCGCTACTGAGGATCTGGAGGACCTAGGTTCACTCTTCAGGCCCTTC AGCAGGGAAGTCCGGGTGAAGTTCAGACAGAGACTCACTCTGTGAGTGAAGAATCCAAAC AATCCTCAACTCACCCCCGTCGCATTTTCAGAAGAATATGCCGCTTGCGGCCTGAGCAGG GACCATGCGTGCGCTGGCTCTCACCATATGGCTCTGCTCATCTGCGCAATCTGCCAAGGG GACAAGAGAAAATGGAGGCACCGAGGAAAAGGAGCGATGGTGCCTCTGCGTCACCACATG CACCGACCCGGCAGGCCAGCAGCTAGCACAATGGTAAACAGGTGAAGGCCTCCTTTATCG TTGGCCTTTGCTGGTCCTGTAGTTGCTTCAGGTGTAGCCCATTTGGGTGGGATTGGATGT ACGCCACCATAGAACATTATTAGTATTATTATTTTGCTGCAATCGTTGCTGCTCTCGTGT CTTTACTTTGAGCTGTAGGAGATGCTTCCTCAGGAGGGAAAAAAAAGGTGAACCAGATAA GGCGTTTTGCAGCTTTCCAGCGTTCAGATAGAAAGCAAGCGTCGGGATAGAAAGTGTCCT ACGACCACGAAGTGAGGTTCCTCCCGTGACTTGACCCTCGTGCACCCTCACCCGTAGGCC GAAAGAAAGCAACGTTATGCAGGTCCAAACAAAACCGGATGCTTTTTGGCTGACAAGTTA CCACATGATGTCACGTCACAAACAAAATCGATTGATTGTCAGTATAATTCACCTGTGGCC GCCCACGAGTTAGAAATGACAAGGTGGCATGACACTTTCTTTGGAGCAATTCTAGCGGAC CCACTACGTCGCCAAACATAATTCTTGTTTTCTTAGAGGTTGTTAGCATATGGCGTAGCT TCGTCTTACTTGCGAGGTGCCAAACAAGAGAAATATAGACAACCTTAGGCAGATCTCGGG AAAAGATCGGTCGGATCACGAGCCCGTTCGAT
Protein Sequence (341 aa)
>BART1_0-u36905.005 341 150831_barley_pseudomolecules MEGTDLETDGLAATSSSSAFTEPHDDEEAQSRQEPAKSPAGTATAIRECQSQRRCRTDAV YLHGRKGLKQRPASLDFGSAGFSSGTPFSPGFVVGGAGFVSKGLVSSQISSGVFPSPGTP SYPRRHRPSALGYQKGWSSERVPLPSKGNNTRRYPGSSMAFPLNNRRTLPSKWEDAERWI FSPKSNAGDAREKTATLPHARRPKAKSGPLGPPGRLGGQYSSVSSSVSLFDSGRVGHLAA NSPFLAGVLIPEHYGGAKSNVRRYTSGTAGDEFGIGIVGRSSLAAIGSPAIPSTTVRRRL DTAIESSVSLPSTRESVQGIKKLLSFVFSLLLGVDLWVYRV