Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u35643.012

ChromosomeExonStartStopDirection
chr5H1395640964395640848-
chr5H2395641445395641126-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB00.4121020.288092
morexETI0.4678890.3375730.156544
morexLEA0.6668541.166922.52057
morexEPI0.784770.1557620.49944
morexROO00.2952870.169747
morexROO20.221140.3142380
morexNOD00.2821140.244795
morexRAC000
morexINF10.18580400
morexINF20.2004120.4538650.275685
morexCAR50.27418200
morexCAR150.1942820.6795030
morexLEM0.22673600
morexLOD000.208833
morexPAL000
morexSEN1.511641.692430



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3None-----




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (437 bp)

>BART1_0-u35643.012 437 150831_barley_pseudomolecules
CACACACCGTCCCGTAAACAAAAAGACGAAAAATAGCCTGCCCTTCCTTCCTCTCTTCCC
CTCCCCAAAATTCCCCTCTCCTTCTCTCGCTCCAGTCGCGACGGCGACGGCGACGACGAC
GACGACGATCAGGTATCAATCCCCCGCCCCCTCCCCTCCCTCGCCCGATTCGCGCAGATT
ATTCCCCATCGCTCCCCCGATTGCGAGTTTCCAGCTCCGGAGCAGTAGGTTTTGGCTAGA
ACCCGCCTCCGTAGCCGTCGGTTGTTGGGGTTAAGGGAGATCCGGCAAGAGGCCCTCTGT
TGCCGGCGGCGGATTTGGGCTTCGTTGCAGGTGATGGTACTGATGTTCAATTGATTAATG
ATGACTGTTCCGATGGATAGTACTGCTGTTCCGCCATCGCGGGACCTCGTGCAGCGCCTC
CTTAAGAAGGTGAGCTT



Protein Sequence ( aa)

>BART1_0-u35643.012  150831_barley_pseudomolecules