- Gene BART1_0-u35643
- Gene IDBART1_0-u35643
- Location chr5H: 395634469 - 395641517
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU5Hr1G050800 | 96.8 | - | - | 6822 | -227 | Containing |
Transcripts from Gene BART1_0-u35643
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u35643.001 | 4220 | 4220 bp MSTRG.35643.1 MSTRG.35643 |
BART1_0-u35643.002 | 4090 | 4090 bp MSTRG.35643.2 MSTRG.35643 |
BART1_0-u35643.003 | 3833 | 3833 bp MSTRG.35643.3 MSTRG.35643 |
BART1_0-u35643.004 | 3651 | 3651 bp MSTRG.35643.4 MSTRG.35643 |
BART1_0-u35643.005 | 3653 | 3653 bp MSTRG.35643.5 MSTRG.35643 |
BART1_0-u35643.006 | 4506 | 4506 bp MSTRG.35643.6 MSTRG.35643 |
BART1_0-u35643.007 | 3826 | 3826 bp MSTRG.35643.7 MSTRG.35643 |
BART1_0-u35643.008 | 3685 | 3685 bp MSTRG.35643.8 MSTRG.35643 |
BART1_0-u35643.009 | 3136 | 3136 bp MSTRG.35643.9 MSTRG.35643 |
BART1_0-u35643.010 | 3747 | 3747 bp MSTRG.35643.10 MSTRG.35643 |
BART1_0-u35643.011 | 571 | 571 bp MSTRG.35643.11 MSTRG.35643 |
BART1_0-u35643.012 | 437 | 437 bp MSTRG.35643.12 MSTRG.35643 |
Exon Structure of BART1_0-u35643
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g21350.3 | +1 | 0.0 | 1118 | 607/1007 (60%) | protein|cig3, putative, expressed |
TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+1 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
BRACH PP3 | Bradi3g20200.3.p | +1 | 0.0 | 1076 | 595/1010 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0005634 | nucleus |
GO:0070034 | telomerase RNA binding |
GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
GO:0042162 | telomeric DNA binding |
GO:0016021 | integral component of membrane |
GO:0000932 | P-body |
GO:0007004 | telomere maintenance via telomerase |
GO:0032210 | regulation of telomere maintenance via telomerase |
GO:0044446 | intracellular organelle part |
GO:0090306 | spindle assembly involved in meiosis |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons