Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU5Hr1G05080096.8--6822-227Containing




Transcripts from Gene BART1_0-u35643

TranscriptLength(bp)Description
BART1_0-u35643.00142204220 bp MSTRG.35643.1 MSTRG.35643
BART1_0-u35643.00240904090 bp MSTRG.35643.2 MSTRG.35643
BART1_0-u35643.00338333833 bp MSTRG.35643.3 MSTRG.35643
BART1_0-u35643.00436513651 bp MSTRG.35643.4 MSTRG.35643
BART1_0-u35643.00536533653 bp MSTRG.35643.5 MSTRG.35643
BART1_0-u35643.00645064506 bp MSTRG.35643.6 MSTRG.35643
BART1_0-u35643.00738263826 bp MSTRG.35643.7 MSTRG.35643
BART1_0-u35643.00836853685 bp MSTRG.35643.8 MSTRG.35643
BART1_0-u35643.00931363136 bp MSTRG.35643.9 MSTRG.35643
BART1_0-u35643.01037473747 bp MSTRG.35643.10 MSTRG.35643
BART1_0-u35643.011571571 bp MSTRG.35643.11 MSTRG.35643
BART1_0-u35643.012437437 bp MSTRG.35643.12 MSTRG.35643



Exon Structure of BART1_0-u35643


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g21350.3 +1 0.0 1118 607/1007 (60%) protein|cig3, putative, expressed
TAIR PP10 AT5G19400 @ ARAPORT
AT5G19400.2 @ TAIR
+1 0.0 596 308/656 (47%) Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059
BRACH PP3 Bradi3g20200.3.p +1 0.0 1076 595/1010 (59%) pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0005634nucleus
GO:0070034telomerase RNA binding
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0042162telomeric DNA binding
GO:0016021integral component of membrane
GO:0000932P-body
GO:0007004telomere maintenance via telomerase
GO:0032210regulation of telomere maintenance via telomerase
GO:0044446intracellular organelle part
GO:0090306spindle assembly involved in meiosis



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons