- Transcript BART1_0-u35643.011
- Transcript IDBART1_0-u35643.011
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395640954 | 395640587 | - |
| chr5H | 2 | 395641516 | 395641314 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.221579 | 4.98205 | 3.69703 |
| morex | ETI | 1.94065 | 1.39674 | 0.814313 |
| morex | LEA | 2.1555 | 4.6718 | 1.96169 |
| morex | EPI | 0.285665 | 0.599561 | 1.26236 |
| morex | ROO | 1.12663 | 2.55277 | 1.20611 |
| morex | ROO2 | 0.537547 | 0.831997 | 0.244334 |
| morex | NOD | 2.43783 | 0.798656 | 0.849875 |
| morex | RAC | 1.68898 | 2.28479 | 1.89798 |
| morex | INF1 | 3.87921 | 3.03924 | 1.80376 |
| morex | INF2 | 13.9996 | 7.28928 | 7.41053 |
| morex | CAR5 | 6.74179 | 6.25101 | 4.14915 |
| morex | CAR15 | 2.64819 | 2.14855 | 3.40891 |
| morex | LEM | 1.66277 | 2.24227 | 0.806634 |
| morex | LOD | 1.33737 | 1.04531 | 1.07297 |
| morex | PAL | 0.356618 | 0.673678 | 0.870327 |
| morex | SEN | 1.38276 | 1.5845 | 0.463079 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (571 bp)
>BART1_0-u35643.011 571 150831_barley_pseudomolecules GCTCCGGGCCGCCTACGACCGCCTTTGGGTCGAGTCCAACCCGAACACGGCACGGCGACG ACACACCAGACCACACACCGTCCCGTAAACAAAAAGACGAAAAATAGCCTGCCCTTCCTT CCTCTCTTCCCCTCCCCAAAATTCCCCTCTCCTTCTCTCGCTCCAGTCGCGACGGCGACG GCGACGACGACGACGACGATCAGGTGATGGTACTGATGTTCAATTGATTAATGATGACTG TTCCGATGGATAGTACTGCTGTTCCGCCATCGCGGGACCTCGTGCAGCGCCTCCTTAAGA AGGTGAGCTTTCCTTGTATACTGATGACATCTAGCTATTTCACACTAGGTTGCTTGTTGG GCCGTGTTCCATGTGGCCTGCTGTACCTTGCCTTGTATGTGATTGGTGTATTTTCTTGCT TTGCCTTCTTGGATAGGCACAATTCATGTCAATGGTTTATTATGTATGAGTTTTCAACCA CTAACCGTTGATTGTTACAAAGAAAAAATAAAATACTCTTGACAATCCGAGTTAATCATT CCCTGAATGTTTCCAAGTTTTTTTTTTTGGG
Protein Sequence ( aa)
>BART1_0-u35643.011 150831_barley_pseudomolecules