- Transcript BART1_0-u35643.010
- Transcript IDBART1_0-u35643.010
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635177 | 395634704 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395638333 | 395636153 | - |
| chr5H | 4 | 395638652 | 395638423 | - |
| chr5H | 5 | 395639728 | 395639606 | - |
| chr5H | 6 | 395640406 | 395639813 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.0897 | 9.85681 | 12.8839 |
| morex | ETI | 10.1565 | 11.0845 | 5.68109 |
| morex | LEA | 12.3407 | 4.24177 | 10.6206 |
| morex | EPI | 3.26349 | 7.83443 | 3.91765 |
| morex | ROO | 0.00000318899 | 7.63331 | 4.44045 |
| morex | ROO2 | 5.36187 | 5.14598 | 4.38677 |
| morex | NOD | 9.12433 | 4.03526 | 2.96785 |
| morex | RAC | 6.86078 | 3.65824 | 4.50514 |
| morex | INF1 | 14.166 | 16.4576 | 15.8347 |
| morex | INF2 | 8.72414 | 7.29609 | 1.15978 |
| morex | CAR5 | 1.37307 | 3.25104 | 4.6875 |
| morex | CAR15 | 5.16893 | 4.87115 | 5.77258 |
| morex | LEM | 8.73019 | 6.23111 | 3.2195 |
| morex | LOD | 9.03235 | 2.88191 | 9.55452 |
| morex | PAL | 10.1655 | 2.02682 | 1.78366 |
| morex | SEN | 1.80432 | 3.25241 | 2.46224 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +1 | 0.0 | 1118 | 607/1007 (60%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+1 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +1 | 0.0 | 1076 | 595/1010 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3747 bp)
>BART1_0-u35643.010 3747 150831_barley_pseudomolecules NNNNNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGATCCC AACATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGACTTT TGTGAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGAGGAG TTCAGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAATGCC AACCCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGCATCG GGCTTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGGTTAC TTCTTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGCTGAT GCTAAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGCCCGC TATAAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTCTAAT TACTACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCTTGCA ATATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAGCTTA GCTGCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAAGAAT CGCCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATTACCC CCACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGATGTT AATACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTCCTTC TTTATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAACATTT GAGGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCCAAAT GAAGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACTTGTT GCAATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATATGCT GAAATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTTTGTT GGACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCTTCCA GCCATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTCGGAG ATGGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCTTATG AATAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTGCTTT TTTGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGAAGAT TATGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTCAAGC AAGCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACGGATA CTTTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATTTTTT GATCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGCCATC TCTACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGAAATT GGTAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACAGTTG TGTTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAAGCTC CCGAAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTCTACT GCTGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATCAGCT CCTGGAAACTGTAATGTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTGGGGTTTCAAT GGCAGGCAAGAGGCTATTCCTAGCAATTCAATGTCGACAACTTACGAATTTGTGCAGCCT GTTGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGGCTCTCCGAAC ACAATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGCAATGGTTCCA CATTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGAACAAGAAAAACTCTTAATGATG GGATTAAATAATGTTCATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTTTCAGGGTGGA TTGAGTGGATTACAGTCAATTGTATATTCTCCACATGTATCTGTTGAATCTGGGCGCAAC AATACAAGTTTGATGCATAATCAGGTGAAAGCGACTGAAGAAACCATCCCATCCACTTCT GATTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGTGACAATCAATCTCACTGATGCA CCTGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGTTGGTCCTCCT CCAGGATTTAACCACATCACTCCAAAACGCCATGATGATATTATGCCATTTGAGAAGCTG CAGCACCAACAGATCGATGATTACAGCTGGCTGGATGGTTACCAGCCATCAATGGAACAT GTTCATAACTCAAAAGCTATTTATCTTGATGATGGGACTACCAGCAGTGCATTCACCACT CCCTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGGGGCCAGTGAG AAAACATGGCAAGATTTCCACCTTTTTGACCCTGCAAAGCAGAATATGGTTCAAAACCAC CAACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAAACCTATCGGA TCTGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCTGGATGGTTACTACTGGTAAAAA TCTTCCTTCCTATAGATTCAAAAATTGGATTCTAGCCATGAGCCGTACTTCTCTTACCAT GTCAGTCTGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCACAGCTTGATATACCTATTCA ATTCGGACCCATACCTGCAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAATGGTGGTC TTGGAAGCATAGCAAGTGCTGCTGTTAGGTTTGGGTGTGCCAGGTCTTCCGGGGCCAGTT GGAGGTTGGAGGGTGATTGATCTTTGGACTGTTTGATGGGGATGAATTGTACGCAGAACG CTTGGATGCTCAGGCATGAGGGGTTTGATCGAAGGAACTCGAATCCAGTCACTATAGGCG CGCTATGTGCTTCAGCTCTCATTGGATAAACTGTCTACCATACAGAGAATGGCCAGTGTG TGGCTGCTGTGGTGGAAACTAAATGCCGTTTAGTGTTGCTCGTGCTCATCTATGGCTACT ATGAATTTAGTTCGAGGAACAGTTAGCTTGCTGTCAAATTGGCCCTCGAAGTATACTACA TCTACTTATGTTGCAATGTTTGCGATTTGCTGTTGGCAACAGCAGGTTATAATCCTCGTT TTGTGAGGAAGTTTACTTCGATATCACTATATGATTTGAACAATTTGTTTTGGTGTTTGT CCGGTACCAGAAAACATAACCCTTTTT
Protein Sequence (1006 aa)
>BART1_0-u35643.010 1006 150831_barley_pseudomolecules XXELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILADHDFCEKHEIEYILWQLHYKRIEE FRNHISSAGSAASQNGKNNANPDRIKRIKSAFRSFLSEASGFYHDLMFKIKSNYGLPLGY FLESPENASSPDKNDKRTADAKKALISCHRCLIYLGDLARYKGLFGEADSAKREYAAASN YYKEAVSICPSSGNPHHQLAILASYSGNEVVAVYRYFRSLAADTPFCTARDNLILAFEKN RQIFAQLPINNKVAIARTLPPRSAGRGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKSF FMRFVRLNGILFTKTSLETFEELFDVVISDLKILLSSGPNEEFHFGSDAADNALVIVRLV AILIFTVHNVKKESDNQSYAEIVQRRVLLQNAFTAAFEFVGHILKRCSELRDIASSFYLP AIVVYIEWLACQPELAADSEMDEKHANARSFFWNQCVLLMNKLILTNLASIDGDDDEACF FDMGVYEEGETGNRLALWEDYELRGFSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQRI LSAGKALLNFVQIDQLRIFFDQSSRKFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHEI GNKFDAVATNLGAMQSGVQLCSEGEDDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMST AGWPTIGGPAASQSTASASAPGNCNVSESLPMSSGGWGFNGRQEAIPSNSMSTTYEFVQP VEMPTSSWASNGAPLVGSPNTMPAFSGAISDPRVSAAMVPHFGSPDYSKLILEQEKLLMM GLNNVHLSGNGFPEQRFQGGLSGLQSIVYSPHVSVESGRNNTSLMHNQVKATEETIPSTS DLIVPSAAASGGVTINLTDAPVAVSKKNPVSRPSRPVGPPPGFNHITPKRHDDIMPFEKL QHQQIDDYSWLDGYQPSMEHVHNSKAIYLDDGTTSSAFTTPFPFPGKQQVSGVHTLGASE KTWQDFHLFDPAKQNMVQNHQQINQHSGQVAEKQPAKPIGSGRYLV