Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u35643.009

ChromosomeExonStartStopDirection
chr5H1395635177395634675-
chr5H2395636086395635917-
chr5H3395638333395636228-
chr5H4395638652395638423-
chr5H5395639732395639606-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB22.16669.9617418.0691
morexETI10.588211.221310.1002
morexLEA11.209512.105711.9639
morexEPI13.601815.943112.5561
morexROO5.239666.531244.67541
morexROO26.829227.5236911.9737
morexNOD38.561534.414543.3498
morexRAC10.378612.243511.3469
morexINF110.755320.402117.3008
morexINF28.1378920.734716.7487
morexCAR512.994211.777515.3385
morexCAR154.705047.513885.39146
morexLEM13.801812.5819.3797
morexLOD21.746115.958915.9494
morexPAL8.353349.9045212.047
morexSEN14.217415.340916.8914



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g21350.3 +2 0.0 827 466/812 (57%) protein|cig3, putative, expressed
TAIR PP10 AT5G19400 @ ARAPORT
AT5G19400.2 @ TAIR		 +2 7e-114 377 205/471 (44%) Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059
BRACH PP3 Bradi3g20200.3.p +2 0.0 792 455/812 (56%) pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3136 bp)

>BART1_0-u35643.009 3136 150831_barley_pseudomolecules
TCAGCTTGCAATATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTT
TCGAAGCTTAGCTGCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTT
TGAGAAGAATCGCCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAG
GACATTACCCCCACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCC
CAAGGATGTTAATACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACG
GAAGTCCTTCTTTATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTT
GGAAACATTTGAGGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTC
TGGTCCAAATGAAGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGT
TCGACTTGTTGCAATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCA
GTCATATGCTGAAATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTT
TGAGTTTGTTGGACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTT
CTATCTTCCAGCCATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGC
TGATTCGGAGATGGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGT
CTTGCTTATGAATAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGA
GGCTTGCTTTTTTGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATT
GTGGGAAGATTATGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGA
TTTCTCAAGCAAGCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGC
ACAACGGATACTTTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAG
AATATTTTTTGATCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGA
AGCTGCCATCTCTACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGC
ACATGAAATTGGTAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGG
AGTACAGTTGTGTTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATC
TGAGAAGCTCCCGAAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACA
AATGTCTACTGCTGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATC
TGCATCAGCTCCTGGAAACTGTAATGTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTG
GGGTTTCAATGGCAGGCAAGAGGCTATTCCTAGCAATTCAATGTCGACAACTTACGAATT
TGTGCAGCCTGTTGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGG
CTCTCCGAACACAATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGC
AATGGTTCCACATTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGAACAAGAAAAACT
CTTAATGATGGGATTAAATAATGTTCATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTT
TCAGGGTGGATTGAGTGGATTACAGTCAATTGTATATTCTCCACATGTATCTGTTGAATC
TGGGCGCAACAATACAAGTTTGATGCATAATCAGGTGAAAGCGACTGAAGAAACCATCCC
ATCCACTTCTGATTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGTGACAATCAATCT
CACTGATGCACCTGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGT
TGGTCCTCCTCCAGGATTTAACCACATCACTCCAAAACGCCATGATGATATTATGCCATT
TGAGAAGCTGCAGCACCAACAGATCGATGATTACAGCTGGCTGGATGGTTACCAGCCATC
AATGGAACATGTTCATAACTCAAAAGCTATTTATCTTGATGATGGGACTACCAGCAGTGC
ATTCACCACTCCCTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGG
GGCCAGTGAGAAAACATGGCAAGATTTCCACCTTTTTGACCCTGCAAAGCAGAATATGGT
TCAAAACCACCAACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAA
ACCTATCGGATCTGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCTGGATGGTTACTA
CTGTTATATGTTTTTTCTACGTGGATAGGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCA
CAGCTTGATATACCTATTCAATTCGGACCCATACCTGCAGCCCTTTCATAGTGTTAAATT
TCTTTTGGAGAATGGTGGTCTTGGAAGCATAGCAAGTGCTGCTGTTAGGTTTGGGTGTGC
CAGGTCTTCCGGGGCCAGTTGGAGGTTGGAGGGTGATTGATCTTTGGACTGTTTGATGGG
GATGAATTGTACGCAGAACGCTTGGATGCTCAGGCATGAGGGGTTTGATCGAAGGAACTC
GAATCCAGTCACTATAGGCGCGCTATGTGCTTCAGCTCTCATTGGATAAACTGTCTACCA
TACAGAGAATGGCCAGTGTGTGGCTGCTGTGGTGGAAACTAAATGCCGTTTAGTGTTGCT
CGTGCTCATCTATGGCTACTATGAATTTAGTTCGAGGAACAGTTAGCTTGCTGTCAAATT
GGCCCTCGAAGTATACTACATCTACTTATGTTGCAATGTTTGCGATTTGCTGTTGGCAAC
AGCAGGTTATAATCCTCGTTTTGTGAGGAAGTTTACTTCGATATCACTATATGATTTGAA
CAATTTGTTTTGGTGTTTGTCCGGTACCAGAAAACATAACCCTTTTTGTGCAATAATTTT
CTTGTTACCTTGTCGT



Protein Sequence (809 aa)

>BART1_0-u35643.009 809 150831_barley_pseudomolecules
QLAILASYSGNEVVAVYRYFRSLAADTPFCTARDNLILAFEKNRQIFAQLPINNKVAIAR
TLPPRSAGRGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKSFFMRFVRLNGILFTKTSL
ETFEELFDVVISDLKILLSSGPNEEFHFGSDAADNALVIVRLVAILIFTVHNVKKESDNQ
SYAEIVQRRVLLQNAFTAAFEFVGHILKRCSELRDIASSFYLPAIVVYIEWLACQPELAA
DSEMDEKHANARSFFWNQCVLLMNKLILTNLASIDGDDDEACFFDMGVYEEGETGNRLAL
WEDYELRGFSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQRILSAGKALLNFVQIDQLR
IFFDQSSRKFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHEIGNKFDAVATNLGAMQSG
VQLCSEGEDDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMSTAGWPTIGGPAASQSTAS
ASAPGNCNVSESLPMSSGGWGFNGRQEAIPSNSMSTTYEFVQPVEMPTSSWASNGAPLVG
SPNTMPAFSGAISDPRVSAAMVPHFGSPDYSKLILEQEKLLMMGLNNVHLSGNGFPEQRF
QGGLSGLQSIVYSPHVSVESGRNNTSLMHNQVKATEETIPSTSDLIVPSAAASGGVTINL
TDAPVAVSKKNPVSRPSRPVGPPPGFNHITPKRHDDIMPFEKLQHQQIDDYSWLDGYQPS
MEHVHNSKAIYLDDGTTSSAFTTPFPFPGKQQVSGVHTLGASEKTWQDFHLFDPAKQNMV
QNHQQINQHSGQVAEKQPAKPIGSGRYLV