- Transcript BART1_0-u35643.006
- Transcript IDBART1_0-u35643.006
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395636086 | 395634631 | - |
| chr5H | 2 | 395638333 | 395636228 | - |
| chr5H | 3 | 395638652 | 395638423 | - |
| chr5H | 4 | 395639728 | 395639606 | - |
| chr5H | 5 | 395640403 | 395639813 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.797907 | 4.85889 | 2.80413 |
| morex | ETI | 1.72853 | 2.49927 | 1.32008 |
| morex | LEA | 6.14033 | 2.70882 | 4.34626 |
| morex | EPI | 2.60045 | 2.00724 | 3.39653 |
| morex | ROO | 3.74799 | 4.93069 | 1.97735 |
| morex | ROO2 | 1.036 | 1.07772 | 1.50131 |
| morex | NOD | 4.21238 | 2.82277 | 1.69808 |
| morex | RAC | 1.48169 | 1.09218 | 1.10204 |
| morex | INF1 | 3.59459 | 3.66707 | 6.49865 |
| morex | INF2 | 3.34796 | 1.03925 | 4.49414 |
| morex | CAR5 | 5.54952 | 6.36861 | 5.23492 |
| morex | CAR15 | 6.38578 | 1.6708 | 3.44631 |
| morex | LEM | 1.11386 | 1.45723 | 1.34367 |
| morex | LOD | 2.23734 | 1.84999 | 2.73361 |
| morex | PAL | 2.7134 | 1.98764 | 3.88936 |
| morex | SEN | 1.03794 | 2.02516 | 1.83488 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +1 | 0.0 | 1118 | 607/1007 (60%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+1 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +1 | 0.0 | 1076 | 595/1010 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4506 bp)
>BART1_0-u35643.006 4506 150831_barley_pseudomolecules NNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGATCCCAAC ATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGACTTTTGT GAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGAGGAGTTC AGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAATGCCAAC CCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGCATCGGGC TTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGGTTACTTC TTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGCTGATGCT AAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGCCCGCTAT AAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTCTAATTAC TACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCTTGCAATA TTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAGCTTAGCT GCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAAGAATCGC CAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATTACCCCCA CGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGATGTTAAT ACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTCCTTCTTT ATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAACATTTGAG GAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCCAAATGAA GAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACTTGTTGCA ATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATATGCTGAA ATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTTTGTTGGA CATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCTTCCAGCC ATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTCGGAGATG GACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCTTATGAAT AAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTGCTTTTTT GATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGAAGATTAT GAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTCAAGCAAG CACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACGGATACTT TCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATTTTTTGAT CAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGCCATCTCT ACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGAAATTGGT AACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACAGTTGTGT TCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAAGCTCCCG AAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTCTACTGCT GGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATCAGCTCCT GGAAACTGTAATGTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTGGGGTTTCAATGGC AGGCAAGAGGCTATTCCTAGCAATTCAATGTCGACAACTTACGAATTTGTGCAGCCTGTT GAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGGCTCTCCGAACACA ATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGCAATGGTTCCACAT TTTGGCAGCCCAGATTATTCAAAATTGATCCTTGAACAAGAAAAACTCTTAATGATGGGA TTAAATAATGTTCATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTTTCAGGGTGGATTG AGTGGATTACAGTCAATTGTATATTCTCCACATGTATCTGTTGAATCTGGGCGCAACAAT ACAAGTTTGATGCATAATCAGGTGAAAGCGACTGAAGAAACCATCCCATCCACTTCTGAT TTAATTGTACCATCGGCAGCAGCATCTGGTGGGGTGACAATCAATCTCACTGATGCACCT GTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGTTGGTCCTCCTCCA GGATTTAACCACATCACTCCAAAACGCCATGATGATATTATGCCATTTGAGAAGCTGCAG CACCAACAGATCGATGATTACAGCTGGCTGGATGGTTACCAGCCATCAATGGAACATGTT CATAACTCAAAAGCTATTTATCTTGATGATGGGACTACCAGCAGTGCATTCACCACTCCC TTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGGGGCCAGTGAGAAA ACATGGCAAGATTTCCACCTTTTTGACCCTGCAAAGCAGAATATGGTTCAAAACCACCAA CAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAAACCTATCGGATCT GGCCGTTATCTTGTGTGACGGAGTAACTTGTACCTGGATGGTTACTACTGTTATATGTTT TTTCTACGTGGATAGGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCACAGCTTGATATAC CTATTCAATTCGGACCCATACCTGCAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAAT GGTGGTCTTGGAAGCATAGCAAGTGCTGCTGTTAGGTTTGGTAAGTTCTATGCTAACACC CATTCCAGCATTTTTCCTTATTCTTTTTTCGGATGTCCCGGCCTTTAGGATGTTTTTTTC TTTTATGTCTCCTCCTTTTCCTTATGATGGTTGAAAGGGTGTTGGCGTACAACATGAAAC TGTGTTTCAAAGTCTAATGATCCTATTTGAAACTGGCAATTTTTTAGTGCATTTCTTATA GACACAATCGATTCATTCCTGTTGTGTCAGCATTTCTTGCTATGTCATCATATCTCCAAC TGGCATCTTACCATGAATTACTCTTTTTTGTGCAGTTTATAATTTGGTTTGGAACTGTTT GGTGATCATTTCTACTATAAATGCATTCTATGTTTCTGTTAAATCATATGTTAGGCTGTA CTACATGTTATGTTGTATAAGGGTCGTAGTTTCAATCCTGAGCTGCAAGTTACTTCCTCA GTAAACTAATATAAGACTTCTATAGAAACTATAAGAGTACTTGTTTTTTGGCACTGCATT CATTCAAATATGTCATTCTGCATGTAATGTCAATCTGCAGAAGGAATACCAAACTTGTCT AACAATGTCAAATATATTTCATTTTTTTGCTGTTACTAAGACTGATGAATCGTCTCTCTT GGCTGAACTCTTGTTGACTTGAACTTGTTTGCCCAATCTACTGTTTTAATTAGAATGCGA GCTTTCCTTCTTATGATGTTTTAACTGTTGTGTATTGTTTGATTTGTGATGAAGTACAGG GTGTGCCAGGTCTTCCGGGGCCAGTTGGAGGTTGGAGGGTGATTGATCTTTGGACTGTTT GATGGGGATGAATTGTACGCAGAACGCTTGGATGCTCAGGCATGAGGGGTTTGATCGAAG GAACTCGAATCCAGTCACTATAGGCGCGCTATGTGCTTCAGCTCTCATTGGATAAACTGT CTACCATACAGAGAATGGCCAGTGTGTGGCTGCTGTGGTGGAAACTAAATGCCGTTTAGT GTTGCTCGTGCTCATCTATGGCTACTATGAATTTAGTTCGAGGAACAGTTAGCTTGCTGT CAAATTGGCCCTCGAAGTATACTACATCTACTTATGTTGCAATGTTTGCGATTTGCTGTT GGCAACAGCAGGTTATAATCCTCGTTTTGTGAGGAAGTTTACTTCGATATCACTATATGA TTTGAACAATTTGTTTTGGTGTTTGTCCGGTACCAGAAAACATAACCCTTTTTGTGCAAT AATTTTCTTGTTACCTTGTCGTATGCAATGCCCGACTGAATACCAATATGGTTTCCTAAT GAGCTT
Protein Sequence (1005 aa)
>BART1_0-u35643.006 1005 150831_barley_pseudomolecules XELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILADHDFCEKHEIEYILWQLHYKRIEEF RNHISSAGSAASQNGKNNANPDRIKRIKSAFRSFLSEASGFYHDLMFKIKSNYGLPLGYF LESPENASSPDKNDKRTADAKKALISCHRCLIYLGDLARYKGLFGEADSAKREYAAASNY YKEAVSICPSSGNPHHQLAILASYSGNEVVAVYRYFRSLAADTPFCTARDNLILAFEKNR QIFAQLPINNKVAIARTLPPRSAGRGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKSFF MRFVRLNGILFTKTSLETFEELFDVVISDLKILLSSGPNEEFHFGSDAADNALVIVRLVA ILIFTVHNVKKESDNQSYAEIVQRRVLLQNAFTAAFEFVGHILKRCSELRDIASSFYLPA IVVYIEWLACQPELAADSEMDEKHANARSFFWNQCVLLMNKLILTNLASIDGDDDEACFF DMGVYEEGETGNRLALWEDYELRGFSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQRIL SAGKALLNFVQIDQLRIFFDQSSRKFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHEIG NKFDAVATNLGAMQSGVQLCSEGEDDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMSTA GWPTIGGPAASQSTASASAPGNCNVSESLPMSSGGWGFNGRQEAIPSNSMSTTYEFVQPV EMPTSSWASNGAPLVGSPNTMPAFSGAISDPRVSAAMVPHFGSPDYSKLILEQEKLLMMG LNNVHLSGNGFPEQRFQGGLSGLQSIVYSPHVSVESGRNNTSLMHNQVKATEETIPSTSD LIVPSAAASGGVTINLTDAPVAVSKKNPVSRPSRPVGPPPGFNHITPKRHDDIMPFEKLQ HQQIDDYSWLDGYQPSMEHVHNSKAIYLDDGTTSSAFTTPFPFPGKQQVSGVHTLGASEK TWQDFHLFDPAKQNMVQNHQQINQHSGQVAEKQPAKPIGSGRYLV