- Transcript BART1_0-u35643.005
- Transcript IDBART1_0-u35643.005
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635182 | 395634630 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395637123 | 395636228 | - |
| chr5H | 4 | 395638333 | 395637226 | - |
| chr5H | 5 | 395638652 | 395638423 | - |
| chr5H | 6 | 395639728 | 395639606 | - |
| chr5H | 7 | 395640410 | 395639813 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.59599 | 9.62398 | 9.28755 |
| morex | ETI | 4.68493 | 8.65173 | 5.64712 |
| morex | LEA | 10.3324 | 8.47919 | 10.2789 |
| morex | EPI | 3.7924 | 6.28014 | 3.71991 |
| morex | ROO | 2.61688 | 5.24089 | 2.48688 |
| morex | ROO2 | 4.33775 | 5.63525 | 5.32577 |
| morex | NOD | 15.2105 | 14.6483 | 13.2344 |
| morex | RAC | 8.26041 | 5.90189 | 7.1386 |
| morex | INF1 | 15.7088 | 13.893 | 14.3156 |
| morex | INF2 | 19.0584 | 12.4819 | 14.4841 |
| morex | CAR5 | 9.6074 | 6.32397 | 11.4573 |
| morex | CAR15 | 6.04349 | 7.80802 | 5.87246 |
| morex | LEM | 11.6578 | 6.97294 | 4.40681 |
| morex | LOD | 9.61814 | 7.59685 | 8.83194 |
| morex | PAL | 5.73137 | 6.04885 | 4.35047 |
| morex | SEN | 7.70051 | 10.1622 | 7.69218 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +2 | 0.0 | 1089 | 599/1007 (59%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+2 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +2 | 0.0 | 1050 | 579/1008 (57%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3653 bp)
>BART1_0-u35643.005 3653 150831_barley_pseudomolecules NNNNNNNNNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGA TCCCAACATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGA CTTTTGTGAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGA GGAGTTCAGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAA TGCCAACCCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGC ATCGGGCTTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGG TTACTTCTTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGC TGATGCTAAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGC CCGCTATAAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTC TAATTACTACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCT TGCAATATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAG CTTAGCTGCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAA GAATCGCCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATT ACCCCCACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGA TGTTAATACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTC CTTCTTTATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAAC ATTTGAGGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCC AAATGAAGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACT TGTTGCAATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATA TGCTGAAATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTT TGTTGGACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCT TCCAGCCATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTC GGAGATGGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCT TATGAATAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTG CTTTTTTGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGA AGATTATGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTC AAGCAAGCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACG GATACTTTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATT TTTTGATCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGC CATCTCTACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGA AATTGGTAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACA GTTGTGTTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAA GCTCCCGAAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTC TACTGCTGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATC AGCTCCTGGAAACTGTAATCCTGTTGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGC ACCACTTGTTGGCTCTCCGAACACAATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCG TGTATCTGCAGCAATGGTTCCACATTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGA ACAAGAAAAACTCTTAATGATGGGATTAAATAATGTTCATTTGTCTGGAAATGGATTCCC TGAGCAGAGGTTTCAGGGTGGATTGAGTGGATTACAGTCAATTGTATATTCTCCACATGT ATCTGTTGAATCTGGGCGCAACAATACAAGTTTGATGCATAATCAGGTGAAAGCGACTGA AGAAACCATCCCATCCACTTCTGATTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGT GACAATCAATCTCACTGATGCACCTGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCC ATCAAGGCCCGTTGGTCCTCCTCCAGGATTTAACCACATCACTCCAAAACGCCATGATGA TATTATGCCATTTGAGAAGCTGCAGCACCAACAGATCGATGATTACAGCTGGCTGGATGG TTACCAGCCATCAATGGAACATGTTCATAACTCAAAAGCTATTTATCTTGATGATGGGAC TACCAGCAGTGCATTCACCACTCCCTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGT GCACACCCTAGGGGCCAGTGAGAAAACATGGCAAGATTTCCACCTTTTTGACCCTGCAAA GCAGAATATGGTTCAAAACCACCAACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAA GCAGCCGGCAAAACCTATCGGATCTGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCT GGATGGTTACTACTGGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCACAGCTTGATATAC CTATTCAATTCGGACCCATACCTGCAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAAT GGTGGTCTTGGAAGCATAGCAAGTGCTGCTGTTAGGTTTGTACAGGGTGTGCCAGGTCTT CCGGGGCCAGTTGGAGGTTGGAGGGTGATTGATCTTTGGACTGTTTGATGGGGATGAATT GTACGCAGAACGCTTGGATGCTCAGGCATGAGGGGTTTGATCGAAGGAACTCGAATCCAG TCACTATAGGCGCGCTATGTGCTTCAGCTCTCATTGGATAAACTGTCTACCATACAGAGA ATGGCCAGTGTGTGGCTGCTGTGGTGGAAACTAAATGCCGTTTAGTGTTGCTCGTGCTCA TCTATGGCTACTATGAATTTAGTTCGAGGAACAGTTAGCTTGCTGTCAAATTGGCCCTCG AAGTATACTACATCTACTTATGTTGCAATGTTTGCGATTTGCTGTTGGCAACAGCAGGTT ATAATCCTCGTTTTGTGAGGAAGTTTACTTCGATATCACTATATGATTTGAACAATTTGT TTTGGTGTTTGTCCGGTACCAGAAAACATAACCCTTTTTGTGCAATAATTTTCTTGTTAC CTTGTCGTATGCAATGCCCGACTGAATACCAATATGGTTTCCTAATGAGCTTG
Protein Sequence (973 aa)
>BART1_0-u35643.005 973 150831_barley_pseudomolecules XXXELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILADHDFCEKHEIEYILWQLHYKRIE EFRNHISSAGSAASQNGKNNANPDRIKRIKSAFRSFLSEASGFYHDLMFKIKSNYGLPLG YFLESPENASSPDKNDKRTADAKKALISCHRCLIYLGDLARYKGLFGEADSAKREYAAAS NYYKEAVSICPSSGNPHHQLAILASYSGNEVVAVYRYFRSLAADTPFCTARDNLILAFEK NRQIFAQLPINNKVAIARTLPPRSAGRGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKS FFMRFVRLNGILFTKTSLETFEELFDVVISDLKILLSSGPNEEFHFGSDAADNALVIVRL VAILIFTVHNVKKESDNQSYAEIVQRRVLLQNAFTAAFEFVGHILKRCSELRDIASSFYL PAIVVYIEWLACQPELAADSEMDEKHANARSFFWNQCVLLMNKLILTNLASIDGDDDEAC FFDMGVYEEGETGNRLALWEDYELRGFSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQR ILSAGKALLNFVQIDQLRIFFDQSSRKFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHE IGNKFDAVATNLGAMQSGVQLCSEGEDDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMS TAGWPTIGGPAASQSTASASAPGNCNPVEMPTSSWASNGAPLVGSPNTMPAFSGAISDPR VSAAMVPHFGSPDYSKLILEQEKLLMMGLNNVHLSGNGFPEQRFQGGLSGLQSIVYSPHV SVESGRNNTSLMHNQVKATEETIPSTSDLIVPSAAASGGVTINLTDAPVAVSKKNPVSRP SRPVGPPPGFNHITPKRHDDIMPFEKLQHQQIDDYSWLDGYQPSMEHVHNSKAIYLDDGT TSSAFTTPFPFPGKQQVSGVHTLGASEKTWQDFHLFDPAKQNMVQNHQQINQHSGQVAEK QPAKPIGSGRYLV