- Transcript BART1_0-u35643.004
- Transcript IDBART1_0-u35643.004
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635177 | 395634627 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395637123 | 395636228 | - |
| chr5H | 4 | 395638333 | 395637226 | - |
| chr5H | 5 | 395638652 | 395638423 | - |
| chr5H | 6 | 395639728 | 395639606 | - |
| chr5H | 7 | 395640410 | 395639813 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 9.61556 | 0 | 0.0000947463 |
| morex | ETI | 10.7446 | 8.55918 | 12.0673 |
| morex | LEA | 0.0000071288 | 0 | 0.188236 |
| morex | EPI | 12.3326 | 14.3969 | 11.9537 |
| morex | ROO | 7.80947 | 0 | 1.07194 |
| morex | ROO2 | 6.23033 | 7.26308 | 6.9744 |
| morex | NOD | 0.252694 | 24.8775 | 29.4887 |
| morex | RAC | 9.0936 | 9.12042 | 10.4081 |
| morex | INF1 | 0 | 1.51702 | 0.659907 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 9.95703 | 13.6708 | 10.4776 |
| morex | LOD | 16.2508 | 10.1197 | 12.9018 |
| morex | PAL | 9.22585 | 8.80846 | 9.91629 |
| morex | SEN | 10.3139 | 6.03972 | 9.77281 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +2 | 0.0 | 1089 | 599/1007 (59%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+2 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +2 | 0.0 | 1050 | 579/1008 (57%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3651 bp)
>BART1_0-u35643.004 3651 150831_barley_pseudomolecules NNNNNNNNNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGA TCCCAACATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGA CTTTTGTGAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGA GGAGTTCAGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAA TGCCAACCCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGC ATCGGGCTTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGG TTACTTCTTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGC TGATGCTAAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGC CCGCTATAAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTC TAATTACTACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCT TGCAATATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAG CTTAGCTGCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAA GAATCGCCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATT ACCCCCACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGA TGTTAATACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTC CTTCTTTATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAAC ATTTGAGGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCC AAATGAAGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACT TGTTGCAATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATA TGCTGAAATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTT TGTTGGACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCT TCCAGCCATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTC GGAGATGGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCT TATGAATAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTG CTTTTTTGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGA AGATTATGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTC AAGCAAGCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACG GATACTTTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATT TTTTGATCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGC CATCTCTACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGA AATTGGTAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACA GTTGTGTTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAA GCTCCCGAAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTC TACTGCTGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATC AGCTCCTGGAAACTGTAATCCTGTTGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGC ACCACTTGTTGGCTCTCCGAACACAATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCG TGTATCTGCAGCAATGGTTCCACATTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGA ACAAGAAAAACTCTTAATGATGGGATTAAATAATGTTCATTTGTCTGGAAATGGATTCCC TGAGCAGAGGTTTCAGGGTGGATTGAGTGGATTACAGTCAATTGTATATTCTCCACATGT ATCTGTTGAATCTGGGCGCAACAATACAAGTTTGATGCATAATCAGGTGAAAGCGACTGA AGAAACCATCCCATCCACTTCTGATTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGT GACAATCAATCTCACTGATGCACCTGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCC ATCAAGGCCCGTTGGTCCTCCTCCAGGATTTAACCACATCACTCCAAAACGCCATGATGA TATTATGCCATTTGAGAAGCTGCAGCACCAACAGATCGATGATTACAGCTGGCTGGATGG TTACCAGCCATCAATGGAACATGTTCATAACTCAAAAGCTATTTATCTTGATGATGGGAC TACCAGCAGTGCATTCACCACTCCCTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGT GCACACCCTAGGGGCCAGTGAGAAAACATGGCAAGATTTCCACCTTTTTGACCCTGCAAA GCAGAATATGGTTCAAAACCACCAACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAA GCAGCCGGCAAAACCTATCGGATCTGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCT GGATGGTTACTACTGGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCACAGCTTGATATAC CTATTCAATTCGGACCCATACCTGCAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAAT GGTGGTCTTGGAAGCATAGCAAGTGCTGCTGTTAGGTTTGGGTGTGCCAGGTCTTCCGGG GCCAGTTGGAGGTTGGAGGGTGATTGATCTTTGGACTGTTTGATGGGGATGAATTGTACG CAGAACGCTTGGATGCTCAGGCATGAGGGGTTTGATCGAAGGAACTCGAATCCAGTCACT ATAGGCGCGCTATGTGCTTCAGCTCTCATTGGATAAACTGTCTACCATACAGAGAATGGC CAGTGTGTGGCTGCTGTGGTGGAAACTAAATGCCGTTTAGTGTTGCTCGTGCTCATCTAT GGCTACTATGAATTTAGTTCGAGGAACAGTTAGCTTGCTGTCAAATTGGCCCTCGAAGTA TACTACATCTACTTATGTTGCAATGTTTGCGATTTGCTGTTGGCAACAGCAGGTTATAAT CCTCGTTTTGTGAGGAAGTTTACTTCGATATCACTATATGATTTGAACAATTTGTTTTGG TGTTTGTCCGGTACCAGAAAACATAACCCTTTTTGTGCAATAATTTTCTTGTTACCTTGT CGTATGCAATGCCCGACTGAATACCAATATGGTTTCCTAATGAGCTTGCTT
Protein Sequence (973 aa)
>BART1_0-u35643.004 973 150831_barley_pseudomolecules XXXELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILADHDFCEKHEIEYILWQLHYKRIE EFRNHISSAGSAASQNGKNNANPDRIKRIKSAFRSFLSEASGFYHDLMFKIKSNYGLPLG YFLESPENASSPDKNDKRTADAKKALISCHRCLIYLGDLARYKGLFGEADSAKREYAAAS NYYKEAVSICPSSGNPHHQLAILASYSGNEVVAVYRYFRSLAADTPFCTARDNLILAFEK NRQIFAQLPINNKVAIARTLPPRSAGRGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKS FFMRFVRLNGILFTKTSLETFEELFDVVISDLKILLSSGPNEEFHFGSDAADNALVIVRL VAILIFTVHNVKKESDNQSYAEIVQRRVLLQNAFTAAFEFVGHILKRCSELRDIASSFYL PAIVVYIEWLACQPELAADSEMDEKHANARSFFWNQCVLLMNKLILTNLASIDGDDDEAC FFDMGVYEEGETGNRLALWEDYELRGFSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQR ILSAGKALLNFVQIDQLRIFFDQSSRKFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHE IGNKFDAVATNLGAMQSGVQLCSEGEDDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMS TAGWPTIGGPAASQSTASASAPGNCNPVEMPTSSWASNGAPLVGSPNTMPAFSGAISDPR VSAAMVPHFGSPDYSKLILEQEKLLMMGLNNVHLSGNGFPEQRFQGGLSGLQSIVYSPHV SVESGRNNTSLMHNQVKATEETIPSTSDLIVPSAAASGGVTINLTDAPVAVSKKNPVSRP SRPVGPPPGFNHITPKRHDDIMPFEKLQHQQIDDYSWLDGYQPSMEHVHNSKAIYLDDGT TSSAFTTPFPFPGKQQVSGVHTLGASEKTWQDFHLFDPAKQNMVQNHQQINQHSGQVAEK QPAKPIGSGRYLV