- Transcript BART1_0-u35643.003
- Transcript IDBART1_0-u35643.003
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635177 | 395634614 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395638333 | 395636161 | - |
| chr5H | 4 | 395638652 | 395638423 | - |
| chr5H | 5 | 395639728 | 395639606 | - |
| chr5H | 6 | 395640410 | 395639813 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.04733 | 0 | 1.87838 |
| morex | ETI | 2.45246 | 1.44773 | 3.88571 |
| morex | LEA | 0 | 2.42381 | 0.00000220947 |
| morex | EPI | 0.836668 | 0.477302 | 0.733758 |
| morex | ROO | 5.36912 | 0.468012 | 0.746575 |
| morex | ROO2 | 0.933602 | 0.544309 | 0 |
| morex | NOD | 1.69722 | 5.2392 | 0.0000000462789 |
| morex | RAC | 2.39348 | 0.940551 | 1.97428 |
| morex | INF1 | 0.000000813038 | 3.65243 | 2.99733 |
| morex | INF2 | 1.95434 | 2.21491 | 1.23749 |
| morex | CAR5 | 2.3639 | 1.19789 | 0.929204 |
| morex | CAR15 | 0 | 0.0000000283689 | 2.9505 |
| morex | LEM | 2.63481 | 3.11559 | 0.914335 |
| morex | LOD | 0.00000492844 | 1.79265 | 1.26054 |
| morex | PAL | 1.30465 | 3.90347 | 4.98719 |
| morex | SEN | 1.50119 | 2.0325 | 2.66941 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +2 | 0.0 | 1118 | 607/1007 (60%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+2 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +2 | 0.0 | 1076 | 595/1010 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3833 bp)
>BART1_0-u35643.003 3833 150831_barley_pseudomolecules NNNNNNNNNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGA TCCCAACATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGA CTTTTGTGAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGA GGAGTTCAGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAA TGCCAACCCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGC ATCGGGCTTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGG TTACTTCTTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGC TGATGCTAAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGC CCGCTATAAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTC TAATTACTACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCT TGCAATATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAG CTTAGCTGCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAA GAATCGCCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATT ACCCCCACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGA TGTTAATACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTC CTTCTTTATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAAC ATTTGAGGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCC AAATGAAGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACT TGTTGCAATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATA TGCTGAAATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTT TGTTGGACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCT TCCAGCCATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTC GGAGATGGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCT TATGAATAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTG CTTTTTTGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGA AGATTATGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTC AAGCAAGCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACG GATACTTTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATT TTTTGATCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGC CATCTCTACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGA AATTGGTAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACA GTTGTGTTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAA GCTCCCGAAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTC TACTGCTGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATC AGCTCCTGGAAACTGTAATGTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTGGGGTTT CAATGGCAGGCAAGAGGCTATTCCTAGCAATTCAATGTCGACAACTTACGAATTTGTGCA GCCTGTTGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGGCTCTCC GAACACAATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGCAATGGT TCCACATTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGAACAAGAAAAACTCTTAAT GATGGGATTAAATAATGTTCATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTTTCAGGG TGGATTGAGTGGATTACAGTCAATTGTATATTCTCCACATGTATCTGTTGAATCTGGGCG CAACAATACAAGTTTGATGCATAATCAGGTGAAAGCGACTGAAGAAACCATCCCATCCAC TTCTGATTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGTGACAATCAATCTCACTGA TGCACCTGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGTTGGTCC TCCTCCAGGATTTAACCACATCACTCCAAAACGCCATGATGATATTATGCCATTTGAGAA GCTGCAGCACCAACAGATCGATGATTACAGCTGGCTGGATGGTTACCAGCCATCAATGGA ACATGTTCATAACTCAAAAGCTATTTATCTTGATGATGGGACTACCAGCAGTGCATTCAC CACTCCCTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGGGGCCAG TGAGAAAACATGGCAAGATTTCCACCTTTTTGACCCTGCAAAGCAGAATATGGTTCAAAA CCACCAACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAAACCTAT CGGATCTGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCTGGATGGTTACTACTGGTA AAAATCTTCCTTCCTATAGATTCAAAAATTGGATTCTAGCCATGAGCCGTACTTCTCTTA CCATGAGTCGCTGAGGATCTGTTGGAGTAAGTGGCACAGCTTGATATACCTATTCAATTC GGACCCATACCTGCAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAATGGTGGTCTTGG AAGCATAGCAAGTGCTGCTGTTAGGTTTGGGTGTGCCAGGTCTTCCGGGGCCAGTTGGAG GTTGGAGGGTGATTGATCTTTGGACTGTTTGATGGGGATGAATTGTACGCAGAACGCTTG GATGCTCAGGCATGAGGGGTTTGATCGAAGGAACTCGAATCCAGTCACTATAGGCGCGCT ATGTGCTTCAGCTCTCATTGGATAAACTGTCTACCATACAGAGAATGGCCAGTGTGTGGC TGCTGTGGTGGAAACTAAATGCCGTTTAGTGTTGCTCGTGCTCATCTATGGCTACTATGA ATTTAGTTCGAGGAACAGTTAGCTTGCTGTCAAATTGGCCCTCGAAGTATACTACATCTA CTTATGTTGCAATGTTTGCGATTTGCTGTTGGCAACAGCAGGTTATAATCCTCGTTTTGT GAGGAAGTTTACTTCGATATCACTATATGATTTGAACAATTTGTTTTGGTGTTTGTCCGG TACCAGAAAACATAACCCTTTTTGTGCAATAATTTTCTTGTTACCTTGTCGTATGCAATG CCCGACTGAATACCAATATGGTTTCCTAATGAGCTTGCTTGTGTGTTGTTTTT
Protein Sequence (1007 aa)
>BART1_0-u35643.003 1007 150831_barley_pseudomolecules XXXELKSHLEKSAQSKVPSDPNIWLQMRENFEKMILADHDFCEKHEIEYILWQLHYKRIE EFRNHISSAGSAASQNGKNNANPDRIKRIKSAFRSFLSEASGFYHDLMFKIKSNYGLPLG YFLESPENASSPDKNDKRTADAKKALISCHRCLIYLGDLARYKGLFGEADSAKREYAAAS NYYKEAVSICPSSGNPHHQLAILASYSGNEVVAVYRYFRSLAADTPFCTARDNLILAFEK NRQIFAQLPINNKVAIARTLPPRSAGRGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKS FFMRFVRLNGILFTKTSLETFEELFDVVISDLKILLSSGPNEEFHFGSDAADNALVIVRL VAILIFTVHNVKKESDNQSYAEIVQRRVLLQNAFTAAFEFVGHILKRCSELRDIASSFYL PAIVVYIEWLACQPELAADSEMDEKHANARSFFWNQCVLLMNKLILTNLASIDGDDDEAC FFDMGVYEEGETGNRLALWEDYELRGFSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQR ILSAGKALLNFVQIDQLRIFFDQSSRKFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHE IGNKFDAVATNLGAMQSGVQLCSEGEDDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMS TAGWPTIGGPAASQSTASASAPGNCNVSESLPMSSGGWGFNGRQEAIPSNSMSTTYEFVQ PVEMPTSSWASNGAPLVGSPNTMPAFSGAISDPRVSAAMVPHFGSPDYSKLILEQEKLLM MGLNNVHLSGNGFPEQRFQGGLSGLQSIVYSPHVSVESGRNNTSLMHNQVKATEETIPST SDLIVPSAAASGGVTINLTDAPVAVSKKNPVSRPSRPVGPPPGFNHITPKRHDDIMPFEK LQHQQIDDYSWLDGYQPSMEHVHNSKAIYLDDGTTSSAFTTPFPFPGKQQVSGVHTLGAS EKTWQDFHLFDPAKQNMVQNHQQINQHSGQVAEKQPAKPIGSGRYLV