- Transcript BART1_0-u35643.002
- Transcript IDBART1_0-u35643.002
- Gene IDBART1_0-u35643
Barley RTD
Exon Structure of BART1_0-u35643.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 395635182 | 395634469 | - |
| chr5H | 2 | 395636061 | 395635917 | - |
| chr5H | 3 | 395638333 | 395636228 | - |
| chr5H | 4 | 395638652 | 395638423 | - |
| chr5H | 5 | 395639728 | 395639606 | - |
| chr5H | 6 | 395640584 | 395639813 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.298395 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.272647 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g21350.3 | +2 | 0.0 | 1118 | 607/1007 (60%) | protein|cig3, putative, expressed |
| TAIR PP10 | AT5G19400 @ ARAPORT AT5G19400.2 @ TAIR |
+2 | 0.0 | 596 | 308/656 (47%) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059 |
| BRACH PP3 | Bradi3g20200.3.p | +2 | 0.0 | 1076 | 595/1010 (59%) | pacid=32819688 transcript=Bradi3g20200.3 locus=Bradi3g20200 ID=Bradi3g20200.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4090 bp)
>BART1_0-u35643.002 4090 150831_barley_pseudomolecules GGGGGGACCGCGTTAATTAATTTCCATCTTCTTTTTTGAGTTATGGTGTTTCCTGTTTGA TAAATTATTGGTCAGTAGTAAAATTAGTTCATGCGTGACCTTTGGATATAAATGATGATA GCGTGATGTTATTTGTGTAGAATGCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNGAGCTCAAAAGTCATCTTGAGAAGTCAGCACAGTCCAAAGTCCCATCAGATCCCAA CATATGGCTTCAGATGCGTGAGAACTTTGAGAAAATGATTCTGGCAGATCATGACTTTTG TGAAAAGCATGAGATCGAGTATATTTTGTGGCAGTTGCACTACAAAAGAATCGAGGAGTT CAGGAACCACATTAGTTCTGCAGGTTCAGCTGCATCTCAGAATGGTAAGAACAATGCCAA CCCAGATCGAATCAAGAGAATTAAGTCGGCCTTCAGGAGCTTTCTTTCAGAAGCATCGGG CTTCTATCATGACTTGATGTTCAAGATCAAATCCAACTACGGCCTTCCTCTGGGTTACTT CTTGGAGTCTCCTGAGAATGCAAGCAGCCCTGACAAAAATGATAAGAGGACAGCTGATGC TAAGAAAGCCCTGATATCATGCCACCGTTGTCTCATATATCTGGGTGATTTGGCCCGCTA TAAGGGTTTGTTTGGTGAAGCTGATTCTGCAAAACGTGAATATGCTGCGGCTTCTAATTA CTACAAGGAGGCAGTTTCAATCTGCCCTTCCAGCGGCAATCCACACCATCAGCTTGCAAT ATTAGCTTCTTACTCTGGCAATGAGGTAGTGGCTGTCTACAGATACTTTCGAAGCTTAGC TGCAGACACTCCCTTCTGTACAGCACGGGACAACTTGATTCTTGCTTTTGAGAAGAATCG CCAGATCTTTGCACAGCTGCCAATCAACAACAAAGTTGCAATTGCTAGGACATTACCCCC ACGGTCAGCTGGGAGGGGCAGAGGACGGGGCGAAATAAGGTTTCAGCCCAAGGATGTTAA TACTGAAGCAGCTTCAAAAGAGCGAGATCAAAATATTCCTGATACACGGAAGTCCTTCTT TATGCGGTTTGTTAGGCTCAATGGAATTCTTTTCACAAAGACCAGTTTGGAAACATTTGA GGAACTGTTTGATGTGGTCATCAGTGATCTGAAAATTCTCCTCTCTTCTGGTCCAAATGA AGAGTTCCATTTTGGTTCTGATGCTGCAGACAACGCATTAGTTATTGTTCGACTTGTTGC AATCCTTATATTCACAGTGCACAACGTGAAAAAGGAATCAGATAACCAGTCATATGCTGA AATTGTCCAACGCAGGGTACTTCTTCAAAATGCATTTACAGCTGCTTTTGAGTTTGTTGG ACATATTCTCAAAAGGTGCTCAGAGCTTCGTGACATTGCATCAAGTTTCTATCTTCCAGC CATTGTGGTCTACATCGAATGGCTCGCATGCCAACCGGAGTTAGCTGCTGATTCGGAGAT GGACGAGAAGCATGCGAATGCTCGATCTTTCTTCTGGAACCAGTGTGTCTTGCTTATGAA TAAGCTCATCCTTACAAACCTTGCGTCCATTGATGGTGATGATGATGAGGCTTGCTTTTT TGATATGGGCGTGTATGAAGAGGGTGAAACTGGCAATCGACTTGCATTGTGGGAAGATTA TGAATTAAGGGGATTTTCCCCCTTGGTGCCTGCACATATTATCTTGGATTTCTCAAGCAA GCACACATTTGGAAGTGATGGTAGCACTAAGGAGAAGAAAGCACGGGCACAACGGATACT TTCTGCAGGGAAGGCTCTACTCAATTTTGTCCAGATTGATCAACTGAGAATATTTTTTGA TCAATCTTCAAGAAAATTTGTTGTGGCCAAGGAGCCTCCTGTTTTTGAAGCTGCCATCTC TACTCATAGATCTCGCAATGCACCTGAACCAAATGTTGTTGAGCTGGCACATGAAATTGG TAACAAATTTGATGCAGTGGCAACTAATCTTGGAGCAATGCAGTCGGGAGTACAGTTGTG TTCCGAGGGAGAAGATGATGAAGAAATTGTTTTCAAACCTACAGTATCTGAGAAGCTCCC GAAAGTACGTACCGAACTACCCGTTAATGGATATATTCAGCCTGTACAAATGTCTACTGC TGGGTGGCCAACAATTGGCGGACCAGCTGCTAGTCAGAGTACTGCATCTGCATCAGCTCC TGGAAACTGTAATGTAAGTGAGTCACTTCCCATGTCTTCTGGTGGTTGGGGTTTCAATGG CAGGCAAGAGGCTATTCCTAGCAATTCAATGTCGACAACTTACGAATTTGTGCAGCCTGT TGAGATGCCTACTTCCAGCTGGGCAAGTAATGGTGCACCACTTGTTGGCTCTCCGAACAC AATGCCTGCTTTCTCAGGTGCCATCTCTGATCCGCGTGTATCTGCAGCAATGGTTCCACA TTTTGGCAGCCCAGATTATTCAAAATTGATCCTTGAACAAGAAAAACTCTTAATGATGGG ATTAAATAATGTTCATTTGTCTGGAAATGGATTCCCTGAGCAGAGGTTTCAGGGTGGATT GAGTGGATTACAGTCAATTGTATATTCTCCACATGTATCTGTTGAATCTGGGCGCAACAA TACAAGTTTGATGCATAATCAGGTGAAAGCGACTGAAGAAACCATCCCATCCACTTCTGA TTTAATTGTACCATCGGCAGCAGCATCTGGTGGGGTGACAATCAATCTCACTGATGCACC TGTAGCTGTATCAAAGAAGAATCCTGTAAGTCGTCCATCAAGGCCCGTTGGTCCTCCTCC AGGATTTAACCACATCACTCCAAAACGCCATGATGATATTATGCCATTTGAGAAGCTGCA GCACCAACAGATCGATGATTACAGCTGGCTGGATGGTTACCAGCCATCAATGGAACATGT TCATAACTCAAAAGCTATTTATCTTGATGATGGGACTACCAGCAGTGCATTCACCACTCC CTTCCCTTTCCCTGGGAAACAGCAGGTTTCTGGGGTGCACACCCTAGGGGCCAGTGAGAA AACATGGCAAGATTTCCACCTTTTTGACCCTGCAAAGCAGAATATGGTTCAAAACCACCA ACAAATTAATCAGCACAGTGGTCAAGTGGCAGAAAAGCAGCCGGCAAAACCTATCGGATC TGGCCGTTATCTTGTGTGACGGAGTAACTTGTACCTGGATGGTTACTACTGGAGTCGCTG AGGATCTGTTGGAGTAAGTGGCACAGCTTGATATACCTATTCAATTCGGACCCATACCTG CAGCCCTTTCATAGTGTTAAATTTCTTTTGGAGAATGGTGGTCTTGGAAGCATAGCAAGT GCTGCTGTTAGGTTTGTACAGGGTGTGCCAGGTCTTCCGGGGCCAGTTGGAGGTTGGAGG GTGATTGATCTTTGGACTGTTTGATGGGGATGAATTGTACGCAGAACGCTTGGATGCTCA GGCATGAGGGGTTTGATCGAAGGAACTCGAATCCAGTCACTATAGGCGCGCTATGTGCTT CAGCTCTCATTGGATAAACTGTCTACCATACAGAGAATGGCCAGTGTGTGGCTGCTGTGG TGGAAACTAAATGCCGTTTAGTGTTGCTCGTGCTCATCTATGGCTACTATGAATTTAGTT CGAGGAACAGTTAGCTTGCTGTCAAATTGGCCCTCGAAGTATACTACATCTACTTATGTT GCAATGTTTGCGATTTGCTGTTGGCAACAGCAGGTTATAATCCTCGTTTTGTGAGGAAGT TTACTTCGATATCACTATATGATTTGAACAATTTGTTTTGGTGTTTGTCCGGTACCAGAA AACATAACCCTTTTTGTGCAATAATTTTCTTGTTACCTTGTCGTATGCAATGCCCGACTG AATACCAATATGGTTTCCTAATGAGCTTGCTTGTGTGTTGTTTTTTGGTTTCCATAATGT TGGGTCTTTTTGGACGAGTGCAGGGTTTAGATCCACTCTGGGGATTTAAGAATTCCTGTC TACCTGACGTTGCATTAGAACCCTGTATGCGGTAGGTGTATATGAGGTATATGTGTTCCC AAGCCAGTTA
Protein Sequence (981 aa)
>BART1_0-u35643.002 981 150831_barley_pseudomolecules MRENFEKMILADHDFCEKHEIEYILWQLHYKRIEEFRNHISSAGSAASQNGKNNANPDRI KRIKSAFRSFLSEASGFYHDLMFKIKSNYGLPLGYFLESPENASSPDKNDKRTADAKKAL ISCHRCLIYLGDLARYKGLFGEADSAKREYAAASNYYKEAVSICPSSGNPHHQLAILASY SGNEVVAVYRYFRSLAADTPFCTARDNLILAFEKNRQIFAQLPINNKVAIARTLPPRSAG RGRGRGEIRFQPKDVNTEAASKERDQNIPDTRKSFFMRFVRLNGILFTKTSLETFEELFD VVISDLKILLSSGPNEEFHFGSDAADNALVIVRLVAILIFTVHNVKKESDNQSYAEIVQR RVLLQNAFTAAFEFVGHILKRCSELRDIASSFYLPAIVVYIEWLACQPELAADSEMDEKH ANARSFFWNQCVLLMNKLILTNLASIDGDDDEACFFDMGVYEEGETGNRLALWEDYELRG FSPLVPAHIILDFSSKHTFGSDGSTKEKKARAQRILSAGKALLNFVQIDQLRIFFDQSSR KFVVAKEPPVFEAAISTHRSRNAPEPNVVELAHEIGNKFDAVATNLGAMQSGVQLCSEGE DDEEIVFKPTVSEKLPKVRTELPVNGYIQPVQMSTAGWPTIGGPAASQSTASASAPGNCN VSESLPMSSGGWGFNGRQEAIPSNSMSTTYEFVQPVEMPTSSWASNGAPLVGSPNTMPAF SGAISDPRVSAAMVPHFGSPDYSKLILEQEKLLMMGLNNVHLSGNGFPEQRFQGGLSGLQ SIVYSPHVSVESGRNNTSLMHNQVKATEETIPSTSDLIVPSAAASGGVTINLTDAPVAVS KKNPVSRPSRPVGPPPGFNHITPKRHDDIMPFEKLQHQQIDDYSWLDGYQPSMEHVHNSK AIYLDDGTTSSAFTTPFPFPGKQQVSGVHTLGASEKTWQDFHLFDPAKQNMVQNHQQINQ HSGQVAEKQPAKPIGSGRYLV