- Transcript BART1_0-u33637.024
- Transcript IDBART1_0-u33637.024
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.024
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84479142 | 84476777 | + |
| chr5H | 2 | 84480117 | 84479843 | + |
| chr5H | 3 | 84480655 | 84480237 | + |
| chr5H | 4 | 84480831 | 84480728 | + |
| chr5H | 5 | 84483365 | 84483169 | + |
| chr5H | 6 | 84483994 | 84483785 | + |
| chr5H | 7 | 84490180 | 84489767 | + |
| chr5H | 8 | 84491799 | 84491518 | + |
| chr5H | 9 | 84492003 | 84491913 | + |
| chr5H | 10 | 84493176 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.55204 | 1.74695 | 1.60866 |
| morex | ETI | 0.191272 | 0.462273 | 0.811366 |
| morex | LEA | 0.41962 | 0.500797 | 0 |
| morex | EPI | 0.138561 | 0.727893 | 0.438563 |
| morex | ROO | 0.122711 | 0.225924 | 0.106529 |
| morex | ROO2 | 0.288079 | 0.323475 | 0.193888 |
| morex | NOD | 0.110051 | 0.369371 | 0.093296 |
| morex | RAC | 0.45452 | 1.10941 | 1.02871 |
| morex | INF1 | 2.7963 | 1.37801 | 1.37163 |
| morex | INF2 | 4.45017 | 3.16711 | 4.71095 |
| morex | CAR5 | 1.01195 | 1.45067 | 1.08199 |
| morex | CAR15 | 0.488334 | 0.285605 | 0.395806 |
| morex | LEM | 0.846782 | 0.344724 | 0.693153 |
| morex | LOD | 0.872223 | 0.429547 | 0.470987 |
| morex | PAL | 0.4164 | 0.422638 | 0.316159 |
| morex | SEN | 0.150295 | 0.328722 | 0.261442 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 1127 | 558/818 (68%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 8e-169 | 543 | 326/827 (39%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.1.p | +2 | 0.0 | 1206 | 605/818 (74%) | pacid=32792173 transcript=Bradi1g15440.1 locus=Bradi1g15440 ID=Bradi1g15440.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5053 bp)
>BART1_0-u33637.024 5053 150831_barley_pseudomolecules TTCAGGCGGTGGCTGCGAGCGTCGGTGAGATCTGCGTGCGGGGCGACGCAGAGATGGTAG GCGCGGTGGCGGAAGGCTGGCGGCAGCGCGGCGGCCGGCTGGCGACGGGCTGGTGGCTAG CTAGGGTTGCGAGAGCAGAGGACCTGCAGCGATGTTTGTGTAGGAGCTGCTCGTCGGGCC ACTAGGCTTGGCTTCAAGCGAGGATAACGGTTTGACTCGGTGACACTTTTGGGTGGCATT CTAGTCGTAATTTCAAGAAACCCCAACTTCTAGCTTTTGCAAAGCTGGGCCGGCGCTGCT TCTCGTCTTCGACAAATTTGCATGCAGTAATCCTCGTCTCTGCGAATCGGGCTTTTCGGA GAAGAACCATTCGAGCTGGCTTCTTGGAGTGATTTTAGGAAGCTAAACAACACTTCTTTT TGTGCCTCTGTAGTTTCTCATTAAGTTTATTTTGTTTTAGTAGAATAATCTCTCTCTCTC TCTCTCTCTCTCTCTCAGGCACATGCAAGACATAAGATGCATTGTATTTGTCGAGAGAGT TGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCTGGGTGGAT TATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAATAAACAAAC GGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTTGCCATTAATATTGTTGTCCTGTGCTC ACATTCTGTTAACGACATGACAATTCTCTGATAGGAAAGGGATGTTCCTGTAGGTACATA TAATTGTGACCACACAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAA TTCGCTTTGATCCACCAACGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGA TGCCAAACTCTGAATATGTTTTACTTGTTAGAAGGCACGTCCTTCGATTTTTGTTGCTAT TTTTTTGTTTCCAGCGCAAATTTTATTTAATTGTTCATCTTCATGCAAATTAAAATCTTT GTCTTCTGTATTGTGGACATTATCCACCTCTTTTCCCACTTCATCAGTTGAATATGATGT GCTCAGTATATAATCCTTGGTCACTAGTACCAGTAAATTGTTGTTTACCTATATTACTCA GTGTGTTCCGTTTATCAGTTGAATTGTTTATATTGGATTAAGCATACTGGGCTGGGTGTT AAATGCTAGTGTTCACTTACTATTGTGAGATGACTTGATGTGACTGCCGGTATGACTCCA AATCCTGATATGGTCAAACCTGAAACAATTGATAAATGCCAAGTTCAAAAGCCACTTGTT TGCTTTTTCATTAAGAATCTAAAATTGACTAGTGTTTCCTAGTGTTCACTTAATATTGCA AGTTGGCGTGATGTGAGTGCCGTTATGATACCAAATCCTGATATGTTTTCCTGTCAGATC TGTATGGAAACCGCAGGTAACCATAACATGATAAGGATCTGTTTTCAATCGAGACAACTG TTCATATTTGAGTAGAAAACCGTCCGACTTTTTGCTCGGTTATTGGTGGAAACTAGTCAG CACTTATGATTATTGTCAGTGAGCTGTGAATTCTATTCCTACTGATTACATTTCTCTATT TAGCTATACAAAAAATGTGGACTCGTGCTACAGTGGAAAAATCGCTATACTCAAGTTGTC TTAAGTTGATTTATTAGTACAGTTTCCTCTTGTATTGCAAAAAAACCCTACTTTACCTTT GTTCTCATCATCACTTCTAGCTCTTTTTGGCATGCTACGTAACATGATGATGCAATGCTT GTGTTTCTGTATCAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAG CGGGCAAATGATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGA AAACACCTTGTTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTAT GAACTCAAGTGTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAGTCTGT TTTATGTACCTTAAATTATGGTTTCCTTCTGTTTCATATCACAAATCATTTTCTGGCACA AGTATCTTATGTTTCTCACGGATAATATCTCTGTCTCAGATACTTTACACCTCTTCCGAG ATTCATTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGT GCAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGC CTGCCGAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTT TCCATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTA CTTCCCAGAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTG CTATAAGATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCT AGCTGTGAAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGC GCAAGATAATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACA GGTAGTTATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCA TTCTGAGGTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGT CTACCTGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGAC CTCGCAAGTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGT TGATTTACTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGT TTGCACCCCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAA ATCTCTTCTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAG GCATGGACTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGA AGTGCGGAATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACA TGGTGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATAC TTTGTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTC TGCAAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAA GATTCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGA AACCCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAA GCTTCAGCATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCT ATGCCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCC AAAAGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTT TTTAAGCTCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGC AGATACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATT TGTTTTCCTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAG GAAGATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGG TTATGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGAC TGCTGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCA TCTCTTCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGA TCTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACT AAACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGA GAATTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCT ACCCAAGAAACCCCTCAAAACGCATGTACTACCAGTCATTCCATGGTTGCAAGGATACAA AATCACCAGACTGGCAGACTCACAACCAACCTAGGCTGGTTCTTGGGGATGTTATTGAAT CATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCA TGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAAC TGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAAG ATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACTG GAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATC TGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGATGATGCAATACTGTATAGCTCC TTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAAGTTTTTGTGGGAG TATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGTGAATATTCAGACTATTGA ACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCATGGTACAGACGATAATGCT ACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAATCTTGAGTGGAAAGCTGGA ATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTATCTTTTATTTTTTGAGCGGGGG TACCTTTTGTAGG
Protein Sequence (583 aa)
>BART1_0-u33637.024 583 150831_barley_pseudomolecules MKYVGIIHLNQEQVVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLV SGKVDWCSIKFSTSQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSK FYAVNGFLDLNSKSLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHK RHYKNKKESCTSHGVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQL GPIMQQFAIPALKILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTL TKMKKNLISNAALCQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMH TLRKMSVRSKRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSE KFINVRSLEMILGYEFKDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFY NKYPECTPELLTDLRSASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRF TGPSHGWEAGIGLPKKPLKTHVLPVIPWLQGYKITRLADSQPT