Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G019300	99.5	+	+	32071	13676	Partial-Overlap

Transcripts from Gene BART1_0-u33637

Transcript	Length(bp)	Description
BART1_0-u33637.001	5531	5531 bp MSTRG.33637.1 MSTRG.33637
BART1_0-u33637.002	7796	7796 bp MSTRG.33637.2 MSTRG.33637
BART1_0-u33637.003	7258	7258 bp MSTRG.33637.3 MSTRG.33637
BART1_0-u33637.004	6910	6910 bp MSTRG.33637.4 MSTRG.33637
BART1_0-u33637.005	4649	4649 bp MSTRG.33637.5 MSTRG.33637
BART1_0-u33637.006	4870	4870 bp MSTRG.33637.6 MSTRG.33637
BART1_0-u33637.007	3563	3563 bp MSTRG.33637.7 MSTRG.33637
BART1_0-u33637.008	4418	4418 bp MSTRG.33637.8 MSTRG.33637
BART1_0-u33637.009	3615	3615 bp MSTRG.33637.9 MSTRG.33637
BART1_0-u33637.010	3425	3425 bp MSTRG.33637.10 MSTRG.33637
BART1_0-u33637.011	4256	4256 bp MSTRG.33637.11 MSTRG.33637
BART1_0-u33637.012	5159	5159 bp MSTRG.33637.12 MSTRG.33637
BART1_0-u33637.013	4200	4200 bp MSTRG.33637.13 MSTRG.33637
BART1_0-u33637.014	4720	4720 bp MSTRG.33637.14 MSTRG.33637
BART1_0-u33637.015	6374	6374 bp MSTRG.33637.15 MSTRG.33637
BART1_0-u33637.016	4736	4736 bp MSTRG.33637.16 MSTRG.33637
BART1_0-u33637.017	4421	4421 bp MSTRG.33637.17 MSTRG.33637
BART1_0-u33637.018	3701	3701 bp MSTRG.33637.18 MSTRG.33637
BART1_0-u33637.019	4688	4688 bp MSTRG.33637.19 MSTRG.33637
BART1_0-u33637.020	3229	3229 bp MSTRG.33637.20 MSTRG.33637
BART1_0-u33637.021	3751	3751 bp MSTRG.33637.21 MSTRG.33637
BART1_0-u33637.022	3500	3500 bp MSTRG.33637.22 MSTRG.33637
BART1_0-u33637.023	3716	3716 bp MSTRG.33637.23 MSTRG.33637
BART1_0-u33637.024	5053	5053 bp MSTRG.33637.24 MSTRG.33637
BART1_0-u33637.025	2621	2621 bp MSTRG.33637.25 MSTRG.33637
BART1_0-u33637.026	2141	2141 bp MSTRG.33637.26 MSTRG.33637
BART1_0-u33637.027	2260	2260 bp MSTRG.33637.27 MSTRG.33637
BART1_0-u33637.028	2515	2515 bp MSTRG.33637.28 MSTRG.33637

Exon Structure of BART1_0-u33637

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g38740.1	+1	0.0	1609	790/1110 (71%)	protein|Dicer, putative, expressed
TAIR PP10	AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR	+1	0.0	804	463/1093 (42%)	Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388
BRACH PP3	Bradi1g15440.2.p	+1	0.0	1720	855/1109 (77%)	pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006396	RNA processing
GO:0004386	helicase activity
GO:0042128	nitrate assimilation
GO:0005634	nucleus
GO:0005524	ATP binding
GO:0051214	RNA virus induced gene silencing
GO:0003677	DNA binding
GO:0004525	ribonuclease III activity
GO:0003723	RNA binding
GO:0005515	protein binding
GO:0005737	cytoplasm
GO:0046872	metal ion binding
GO:0016491	oxidoreductase activity
GO:0016075	rRNA catabolic process
GO:0016021	integral component of membrane
GO:0031047	gene silencing by RNA
GO:0016441	posttranscriptional gene silencing
GO:0055114	oxidation-reduction process
GO:0016442	RISC complex
GO:0010216	maintenance of DNA methylation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons