- Transcript BART1_0-u33637.021
- Transcript IDBART1_0-u33637.021
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.021
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84473806 | 84473677 | + |
| chr5H | 2 | 84474019 | 84473884 | + |
| chr5H | 3 | 84477467 | 84477275 | + |
| chr5H | 4 | 84477710 | 84477550 | + |
| chr5H | 5 | 84478810 | 84478592 | + |
| chr5H | 6 | 84479142 | 84478916 | + |
| chr5H | 7 | 84480117 | 84479843 | + |
| chr5H | 8 | 84480655 | 84480237 | + |
| chr5H | 9 | 84480831 | 84480728 | + |
| chr5H | 10 | 84483365 | 84483169 | + |
| chr5H | 11 | 84483994 | 84483785 | + |
| chr5H | 12 | 84490180 | 84489767 | + |
| chr5H | 13 | 84491799 | 84491518 | + |
| chr5H | 14 | 84493265 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.49541 | 1.86058 | 1.62352 |
| morex | ETI | 2.18426 | 1.11762 | 2.00355 |
| morex | LEA | 0.0000000123262 | 0 | 0 |
| morex | EPI | 0.587244 | 0.381687 | 0 |
| morex | ROO | 0.0000275518 | 0.000000000370897 | 0 |
| morex | ROO2 | 0 | 0 | 1.01334 |
| morex | NOD | 0 | 1.43437 | 0 |
| morex | RAC | 2.34891 | 4.00052 | 3.25271 |
| morex | INF1 | 0.00000000111281 | 3.05451 | 1.41453 |
| morex | INF2 | 1.06526 | 3.39014 | 4.01003 |
| morex | CAR5 | 0.00136343 | 3.44383 | 0.00175969 |
| morex | CAR15 | 0.480798 | 0 | 0 |
| morex | LEM | 1.3935 | 2.38026 | 2.82495 |
| morex | LOD | 1.58346 | 0 | 0.00437506 |
| morex | PAL | 2.78 | 2.14755 | 3.6789 |
| morex | SEN | 0 | 0.0473018 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1445 | 710/992 (72%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 764 | 428/974 (44%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.1.p | +1 | 0.0 | 1537 | 767/991 (77%) | pacid=32792173 transcript=Bradi1g15440.1 locus=Bradi1g15440 ID=Bradi1g15440.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3751 bp)
>BART1_0-u33637.021 3751 150831_barley_pseudomolecules TTAGCATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAGAA AGGGATATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGGCT AGCGGCAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGGGG TGAAGAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATACAG GGAACTCTCATGTTTTTCAGAGAGAGGCACATGCAAGACATAAGATGCATTGTATTTGTC GAGAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCT GGGTGGATTATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAAT AAACAAACGGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCACA CAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCCA CCAACGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGAA TATGTTTTACTTGTTAGAAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTT GCAAGCGGGCAAATGATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCA CTAGAAAACACCTTGTTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTG ACTATGAACTCAAGTGTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAA TACTTTACACCTCTTCCGAGATTCATTATTGACAAGGAACTACGTACTTGCACCTTGTAC CTTCCCAATAGCAGCCCTGTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAA AAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTACACGCTGTCGGCGCCCTAACAGATTAT CTGTTACCAGAATTTGGTTTTCCATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATAC CAACACGAGCAGCCTGTGTACTTCCCAGAGGAATTTGTGTACAATTGGTCATCCTTTTCT CGTCTTGGAATATATTATTGCTATAAGATTTCAGTAGAAGGGTGCTTGAAAACAACTTAT TGTCCAAATGACATACTTCTAGCTGTGAAATGTGATTTGGGACCAGAGTTTGTCTCTACC TCACTTCAATTGTTTGGTGCGCAAGATAATGCTAGTCTTGCCATGAAATATGTGGGAATC ATTCATCTGAATCAAGAACAGGTAGTTATGGCCAGAAGGTTTCAGACTACTATTCTTTCT TTGCTTATTAATAAAGACCATTCTGAGGTCAGTAATGCTGTTAAATACTCCCATGAGATG CAAGTGTCCATTGGAATTGTCTACCTGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGG TGCAGTATCAAGTTCTCGACCTCGCAAGTGTATGTTGGCAGTAACAAGGATATCAGACAT TGCCATTCTTGTAAACAAGTTGATTTACTGCAAACAAAAGATGGTCCTCTGTGCAGATGC ATGCTTGAAAGTTCCATTGTTTGCACCCCTCATAATAGCAAATTCTATGCTGTTAATGGG TTCCTTGACTTAAATTCCAAATCTCTTCTGCACCTTCGTGATGGCAGTGCCCTTACCTAC ATAAACTATTTCAAGACTAGGCATGGACTCAGTCTAACACATGAAAATCAACCCCTGTTG GCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCCTCCACAAGCGCCATTATAAAAATAAA AAAGAATCGTGCACTTCACATGGTGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATG TCACCAGTCTCTACTAATACTTTGTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGC ATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAG TTTGCCATACCAGCTCTGAAGATTCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAA TTTTCACAGGAATCATTAGAAACCCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAA CATCTGTATGTCAAACACAAGCTTCAGCATGAGGGGACATTAACCAAGATGAAGAAAAAC TTAATCTCGAATGCAGCTCTATGCCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATT CAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGT GGTAACAGCAAATTTTCCTTTTTAAGCTCCAATGATATGCACACTTTGAGGAAAATGTCT GTTAGAAGTAAGAGAATAGCAGATACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCT GCGGGAGAACAGGCTGCATTTGTTTTCCTAAAATCATTAGGATTGGATATAGGATTTCAC AGCACTATTCCACTTGAAAGGAAGATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGA AGTTTGGAAATGATTCTTGGTTATGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTG ACACATGGGTCATACCAGACTGCTGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTC GGAGACGCTGTGTTGGACCATCTCTTCACTATATATTTCTACAATAAGTACCCTGAATGT ACTCCAGAATTGTTGACAGATCTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCAT GCAGCTGCTAAAGCAGGACTAAACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGA AGGATGGCTTACTACTTTGAGAATTTTACTAAGCACCGATTTACAGGTCCATCACATGGT TGGGAAGCTGGCATTGGTCTACCCAAGGTTCTTGGGGATGTTATTGAATCATTAGCCGGT GCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTA TTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAA TTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCT TCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACTGGAACTGGCCCT GATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATA GTACCATGACACGCTTGCATTTGCAGATGATGCAATACTGTATAGCTCCTTCCGACTTCA CTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTAC TTGACAAATGTGCAGCTCAATCATTGCTTGTGAATATTCAGACTATTGAACTGCACATCT GTGAAGTACGGGCATCGTCTCTCAGAACCATGGTACAGACGATAATGCTACAGTATCCTT AGACTTCTACTTGTACAGTTGTAAGCACAATCTTGAGTGGAAAGCTGGAATATCTTTTTC TCTCCATCGGGCAGTGCAGTGCATGTATCTTTTATTTTTTGAGCGGGGGTACCTTTTGTA GGGCTGGTAATTGTTTTTTTTAAATGGCAGGATGCATTGTTAAGAAGAAAAGATCTGTTT GGTTAATTGTGAAAAACCAAGCGAGAACCAG
Protein Sequence (1019 aa)
>BART1_0-u33637.021 1019 150831_barley_pseudomolecules MFFRERHMQDIRCIVFVERVVTSIVLESLLSIINQMPGWIIKHIAGNRPMLHNQSRNKQT EIVDAFKGGKVHIIVTTQVLEEGLNVPGCHLVIRFDPPTTGRSFIQSRGRARMPNSEYVL LVRRGDAEALSKTVKFLASGQMMREASLKLASTMCQPLENTLLQGEYYRVESTGATVTMN SSVQLIYFFCSKLPSDEYFTPLPRFIIDKELRTCTLYLPNSSPVQTVNAEGEVSALKKAV CLKACRELHAVGALTDYLLPEFGFPCEEEPDIVVEKYQHEQPVYFPEEFVYNWSSFSRLG IYYCYKISVEGCLKTTYCPNDILLAVKCDLGPEFVSTSLQLFGAQDNASLAMKYVGIIHL NQEQVVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLVSGKVDWCSI KFSTSQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSKFYAVNGFLD LNSKSLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHKRHYKNKKES CTSHGVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQLGPIMQQFAI PALKILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTLTKMKKNLIS NAALCQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMHTLRKMSVRS KRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSEKFINVRSLE MILGYEFKDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFYNKYPECTPE LLTDLRSASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRFTGPSHGWEA GIGLPKVLGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVERDPVKLLQEFCD RRSYSRSYTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKLLLEDLKAIVP