- Transcript BART1_0-u33637.015
- Transcript IDBART1_0-u33637.015
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84473806 | 84473528 | + |
| chr5H | 2 | 84474019 | 84473884 | + |
| chr5H | 3 | 84476025 | 84475935 | + |
| chr5H | 4 | 84477467 | 84477275 | + |
| chr5H | 5 | 84479142 | 84477550 | + |
| chr5H | 6 | 84480117 | 84479843 | + |
| chr5H | 7 | 84480655 | 84480237 | + |
| chr5H | 8 | 84480831 | 84480728 | + |
| chr5H | 9 | 84483365 | 84483169 | + |
| chr5H | 10 | 84483994 | 84483785 | + |
| chr5H | 11 | 84492003 | 84489767 | + |
| chr5H | 12 | 84493121 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.348969 | 1.04731 | 0.899964 |
| morex | ETI | 1.24021 | 1.12514 | 1.04992 |
| morex | LEA | 1.7909 | 0.449188 | 0.173554 |
| morex | EPI | 0.922727 | 0.539954 | 0.844534 |
| morex | ROO | 0 | 0.325867 | 0.294542 |
| morex | ROO2 | 1.41188 | 0.735994 | 0.689065 |
| morex | NOD | 0.421044 | 0.69481 | 0.113669 |
| morex | RAC | 1.60368 | 1.01553 | 1.46513 |
| morex | INF1 | 2.33739 | 4.43019 | 3.16714 |
| morex | INF2 | 3.23625 | 6.45738 | 5.95299 |
| morex | CAR5 | 3.40037 | 3.91833 | 1.77435 |
| morex | CAR15 | 0.217667 | 0 | 0.204708 |
| morex | LEM | 0.581008 | 0.413769 | 0.896174 |
| morex | LOD | 0.411096 | 0.575102 | 0.614222 |
| morex | PAL | 0.776677 | 0.662064 | 0.719309 |
| morex | SEN | 0.239216 | 0.643466 | 0.390577 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +3 | 0.0 | 968 | 483/724 (67%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.2 @ TAIR |
+3 | 9e-132 | 450 | 276/733 (38%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 REVERSE LENGTH=1374 |
| BRACH PP3 | Bradi1g15440.1.p | +3 | 0.0 | 1040 | 527/724 (73%) | pacid=32792173 transcript=Bradi1g15440.1 locus=Bradi1g15440 ID=Bradi1g15440.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6374 bp)
>BART1_0-u33637.015 6374 150831_barley_pseudomolecules CAGTTGGAAAGTTGCTATACAATTGTTTTCACATTTTGTTTTTCCCTGGCCTTCTGTTTG TGTTGGTGCGATATAGTAGTTTTTTGGATATGCATGGCCTTGTCTTCTAAGTTTTAACAC CTTCAATAACCTAACATATTTACATTCTCTTAGCATTTAAAAGTCCTCAAGGCAAATCTA CATGGATCGTCTCGGAAAAATGCGAAGAAAGGGATATCAAAATTACACAAGGCATTCTTA TATTGCACGGCTAATCTTGGAGTATGGCTAGCGGCAAAGGCTGCTGAGATACACTCAACA ACTAACGAACAATTCTTATCTTTCTGGGGTGAAGAACTGGATAAGAATGTTGAAGGCTTT GTTAGAAGCTATAGTGAAGAAGTATACAGGGAACTCTCATGTTTTTCAGAGAGAGGTCAT ATTGGTAAAGATTTTGAAGCTGATTTGCAAGATGGGTTATTGACACCTAAAGTTCATTGT CTTGTTCAGTTTCTTCTGGAATACAGGCACATGCAAGACATAAGATGCATTGTATTTGTC GAGAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCT GGGTGGATTATTAAACACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAAT AAACAAACGGAAATTGTTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCACA CAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCCA CCAACGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGAA TATGTTTTACTTGTTAGAAGGCACGTCCTTCGATTTTTGTTGCTATTTTTTTGTTTCCAG CGCAAATTTTATTTAATTGTTCATCTTCATGCAAATTAAAATCTTTGTCTTCTGTATTGT GGACATTATCCACCTCTTTTCCCACTTCATCAGTTGAATATGATGTGCTCAGTATATAAT CCTTGGTCACTAGTACCAGTAAATTGTTGTTTACCTATATTACTCAGTGTGTTCCGTTTA TCAGTTGAATTGTTTATATTGGATTAAGCATACTGGGCTGGGTGTTAAATGCTAGTGTTC ACTTACTATTGTGAGATGACTTGATGTGACTGCCGGTATGACTCCAAATCCTGATATGGT CAAACCTGAAACAATTGATAAATGCCAAGTTCAAAAGCCACTTGTTTGCTTTTTCATTAA GAATCTAAAATTGACTAGTGTTTCCTAGTGTTCACTTAATATTGCAAGTTGGCGTGATGT GAGTGCCGTTATGATACCAAATCCTGATATGTTTTCCTGTCAGATCTGTATGGAAACCGC AGGTAACCATAACATGATAAGGATCTGTTTTCAATCGAGACAACTGTTCATATTTGAGTA GAAAACCGTCCGACTTTTTGCTCGGTTATTGGTGGAAACTAGTCAGCACTTATGATTATT GTCAGTGAGCTGTGAATTCTATTCCTACTGATTACATTTCTCTATTTAGCTATACAAAAA ATGTGGACTCGTGCTACAGTGGAAAAATCGCTATACTCAAGTTGTCTTAAGTTGATTTAT TAGTACAGTTTCCTCTTGTATTGCAAAAAAACCCTACTTTACCTTTGTTCTCATCATCAC TTCTAGCTCTTTTTGGCATGCTACGTAACATGATGATGCAATGCTTGTGTTTCTGTATCA GGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGC GGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGC AGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCC AGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAGTCTGTTTTATGTACCTTAA ATTATGGTTTCCTTCTGTTTCATATCACAAATCATTTTCTGGCACAAGTATCTTATGTTT CTCACGGATAATATCTCTGTCTCAGATACTTTACACCTCTTCCGAGATTCATTATTGACA AGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTAATG CAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTAC ACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAGAAG AACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGGAAT TTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTTCAG TAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTGAAATGTG ATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATGCTA GTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGGCCA GAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCAGTA ATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGCTAC CCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGTATG TTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGCAAA CAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTCATA ATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGCACC TTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGACTCAGTC TAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCC TCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGTTGC CACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCTTCT CGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAG ATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAGCAG TAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGGATT CTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCTTCAGCATGAGG GGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGGCCT GCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCA TTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCAATG ATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTGAGG CATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAAAAT CATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTATTAA AATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCAAGG ATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGCTGGCACTACTG CATGCTATCAGGTTGATTTGAAAACCTCTGGACCTCTCTATCTTACTTTCATTAGCTCCT CCATATTTTATCTTTCATGGAACTTTCTTCACCAAGCGCAAATATATGAACACTGTTGCT ACACTGGTAAGTGGTACCCATGGCACTAGGTGCCTGCCTGTGGGATAAATTGGCTAGGCA ACCGCACCAAGTTTCTTGTAATGCATGAGGTCTATAGAAAATAATATTTAATGCATTTTT TATATATTGCGCTATACATGATTATAATGTACAGTAAATATCTAGCTGAATTATATCAAT ACAAGACTAAGCATAATGAAATATTGACTTTATTATATTATATTAACATTTTAAAAGTGC CGGGAAACACAACAACACATGTATGCTCATTCAAGAAGAGAATTATTGAGGATACAAGAC TAAGCCTAATGAAAGTGTCAAAATGGTTTTACATTTTGGTACGGAGGGAGTACATGACAG TATTATATTATATTTGGTAAGCTTCATGCACTAGCCAACGCAACCAAAAGTCCGAACTGA TGGAAAGGGCTAGTGCAATCCACATATATTGTAACAATATTAACCTTTTAAAAGTGTCCG GAAACACAGTACATATGTTTGCTCATTCAAGAAGAGAATTACTGAGGGCTTAAAGGATAA ATAACTGCAAACAGTAAGTAACGATGTCGTGTGCAAGCTACAGTGGGTCTGCTACTGTTG AGATAAGCAGTACCTTGTGGAACTGTTGCACGCACATCATCAATGTAATTAGAAGGGCCG TGTGGTACTCTTGCTTGCAGATCCTCCATGTACATCGTTCAGAAATAAAATCATTAAGTT CAGATTATAGATAAGATTATTAGTCTGTGAGTAAGATCTTTTTGTTACTACACTATGTAA TCACAAATTTAGTTTTTTCATATTGATGTTTCAGATATAACTAGATGCACTTAAAATGTT TTAGTGGGCTGGACTGAAACCGAGTTGCCAAAAAATCGACCCCGCTGATTTATGGTAGCC CACTTATACAATTGGGGTGCCAAAAAGTGTATCCTTCCAGTTTATGGTAGCCTACACTTC TATACTCGGATGAAAGAATGAGAAGTTCTTGTTGTCTTGATGACACCACAAAAGTTTATA TTAGTTATACATTCTGAAGACTAGCGAGAATGTGAGATTTGGTAGAAATTTTTGGTTGCT ATGGTTAACAATCTATTGGTATGCAAATTCAATTATAGCACTCTGAAGAATATACACTGT AGCTGAATTGAAGTCTAGCAAAGCTGTAGTAAATATAGCTGGGTAGTTTCTTTGGGTGAT GTTCTTACAAGTTTGTGCCCTTATGCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGA CCATCTCTTCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGAC AGATCTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGG ACTAAACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTT TGAGAATTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGG TCTACCCAAGGTGCCTCTTCTTCTGTTTGATGATTTTGATTTGATCCGTATAGTTATTAT TCATTACATGCTTTCTTGCACTTCTGTTTTTGCTTGGTCTGGTATTTGCCTGTACTCTTT CAGAAACCCCTCAAAACGCATGTACTACCAGTCATTCCATGGTTGCAAGGATACAAAATC ACCAGACTGGCAGACTCACAACCAACCTAGGCTGGTTCTTGGGGATGTTATTGAATCATT AGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAA AAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCT GCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACAAAGGTCCAGAAAGATGG AGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACCTACTCAGCAACTGGAAC TGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAA GGCTATAGTACCATGACACGCTTGCATTTGCAGATGATGCAATACTGTATAGCTCCTTCC GACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAAGTTTTTGTGGGAGTATG CGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGTGAATATTCAGACTATTGAACTG CACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCATGGTACAGACGATAATGCTACAG TATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAATCTTGAGTGGAAAGCTGGAATAT CTTTTTCTCTCCAT
Protein Sequence (506 aa)
>BART1_0-u33637.015 506 150831_barley_pseudomolecules MKYVGIIHLNQEQVVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLV SGKVDWCSIKFSTSQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSK FYAVNGFLDLNSKSLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHK RHYKNKKESCTSHGVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQL GPIMQQFAIPALKILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTL TKMKKNLISNAALCQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMH TLRKMSVRSKRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSE KFINVRSLEMILGYEFKDTSLLVEALTHGSYQTAGTTACYQVDLKTSGPLYLTFISSSIF YLSWNFLHQAQIYEHCCYTGKWYPWH