- Transcript BART1_0-u33637.014
- Transcript IDBART1_0-u33637.014
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84473806 | 84473451 | + |
| chr5H | 2 | 84474019 | 84473884 | + |
| chr5H | 3 | 84476025 | 84475935 | + |
| chr5H | 4 | 84478810 | 84477550 | + |
| chr5H | 5 | 84479142 | 84478916 | + |
| chr5H | 6 | 84480117 | 84479843 | + |
| chr5H | 7 | 84480655 | 84480237 | + |
| chr5H | 8 | 84480831 | 84480728 | + |
| chr5H | 9 | 84483365 | 84483169 | + |
| chr5H | 10 | 84483994 | 84483785 | + |
| chr5H | 11 | 84490180 | 84489767 | + |
| chr5H | 12 | 84491799 | 84491518 | + |
| chr5H | 13 | 84493229 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.356427 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1268 | 626/874 (72%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 629 | 361/856 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +1 | 0.0 | 1355 | 683/873 (78%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4720 bp)
>BART1_0-u33637.014 4720 150831_barley_pseudomolecules ATTTAGTCCAAGTGGAAGTTGAAGTAATAATAATATCGTACGATTTGCTTTTCTTATTAA ATACAGCCATGTCTGCACAGTTGGAAAGTTGCTATACAATTGTTTTCACATTTTGTTTTT CCCTGGCCTTCTGTTTGTGTTGGTGCGATATAGTAGTTTTTTGGATATGCATGGCCTTGT CTTCTAAGTTTTAACACCTTCAATAACCTAACATATTTACATTCTCTTAGCATTTAAAAG TCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAGAAAGGGATATCAAAAT TACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGGCTAGCGGCAAAGGCTG CTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGGGGTGAAGAACTGGATA AGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATACAGGGAACTCTCATGTT TTTCAGAGAGAGGTCATATTGGTAAAGATTTTGAAGCTGATTTGCAAGATGGGTTATTGA CACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGGAATACAGGTACATATAATTGTGAC CACACAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGA TCCACCAACGACTGGGCGCAGCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTC TGAATATGTTTTACTTGTTAGAAGGCACGTCCTTCGATTTTTGTTGCTATTTTTTTGTTT CCAGCGCAAATTTTATTTAATTGTTCATCTTCATGCAAATTAAAATCTTTGTCTTCTGTA TTGTGGACATTATCCACCTCTTTTCCCACTTCATCAGTTGAATATGATGTGCTCAGTATA TAATCCTTGGTCACTAGTACCAGTAAATTGTTGTTTACCTATATTACTCAGTGTGTTCCG TTTATCAGTTGAATTGTTTATATTGGATTAAGCATACTGGGCTGGGTGTTAAATGCTAGT GTTCACTTACTATTGTGAGATGACTTGATGTGACTGCCGGTATGACTCCAAATCCTGATA TGGTCAAACCTGAAACAATTGATAAATGCCAAGTTCAAAAGCCACTTGTTTGCTTTTTCA TTAAGAATCTAAAATTGACTAGTGTTTCCTAGTGTTCACTTAATATTGCAAGTTGGCGTG ATGTGAGTGCCGTTATGATACCAAATCCTGATATGTTTTCCTGTCAGATCTGTATGGAAA CCGCAGGTAACCATAACATGATAAGGATCTGTTTTCAATCGAGACAACTGTTCATATTTG AGTAGAAAACCGTCCGACTTTTTGCTCGGTTATTGGTGGAAACTAGTCAGCACTTATGAT TATTGTCAGTGAGCTGTGAATTCTATTCCTACTGATTACATTTCTCTATTTAGCTATACA AAAAATGTGGACTCGTGCTACAGTGGAAAAATCGCTATACTCAAGTTGTCTTAAGTTGAT TTATTAGTACAGTTTCCTCTTGTATTGCAAAAAAACCCTACTTTACCTTTGTTCTCATCA TCACTTCTAGCTCTTTTTGGCATGCTACGTAACATGATGATGCAATGCTTGTGTTTCTGT ATCAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATG ATGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTG TTGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGT GTCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAATACTTTACACCTCTT CCGAGATTCATTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGC CCTGTGCAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTT AAGGCCTGCCGAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTT GGTTTTCCATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCT GTGTACTTCCCAGAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATAT TATTGCTATAAGATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATA CTTCTAGCTGTGAAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTT GGTGCGCAAGATAATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAA GAACAGGTAGTTATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAA GACCATTCTGAGGTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGA ATTGTCTACCTGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTC TCGACCTCGCAAGTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAA CAAGTTGATTTACTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCC ATTGTTTGCACCCCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAAT TCCAAATCTCTTCTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAG ACTAGGCATGGACTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCT GTTGAAGTGCGGAATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACT TCACATGGTGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACT AATACTTTGTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTT CTTTCTGCAAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCT CTGAAGATTCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCA TTAGAAACCCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAA CACAAGCTTCAGCATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCA GCTCTATGCCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTT AACCCAAAAGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTT TCCTTTTTAAGCTCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGA ATAGCAGATACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCT GCATTTGTTTTCCTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTT GAAAGGAAGATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATT CTTGGTTATGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATAC CAGACTGCTGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTG GACCATCTCTTCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTG ACAGATCTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCA GGACTAAACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTAC TTTGAGAATTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATT GGTCTACCCAAGGTTCTTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGAC AGCAAGTATGACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCG ACACCGGAGACGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGG TCTTATAGCAGGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAG GTACAGGTAGAAGGGACTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCA AAAAAGCTTGCAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCT TGCATTTGCAGATGATGCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTA GCCTGTAGGTAGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAG CTCAATCATTGCTTGTGAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCAT CGTCTCTCAGAACCATGGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTA CAGTTGTAAGCACAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGT GCAGTGCATGTATCTTTTATTTTTTGAGCGGGGGTACCTTTTGTAGGGCTGGTAATTGTT TTTTTTAAATGGCAGGATGCATTGTTAAGAAGAAAAGATC
Protein Sequence (910 aa)
>BART1_0-u33637.014 910 150831_barley_pseudomolecules MLRNMMMQCLCFCIRGDAEALSKTVKFLASGQMMREASLKLASTMCQPLENTLLQGEYYR VESTGATVTMNSSVQLIYFFCSKLPSDEYFTPLPRFIIDKELRTCTLYLPNSSPVQTVNA EGEVSALKKAVCLKACRELHAVGALTDYLLPEFGFPCEEEPDIVVEKYQHEQPVYFPEEF VYNWSSFSRLGIYYCYKISVEGCLKTTYCPNDILLAVKCDLGPEFVSTSLQLFGAQDNAS LAMKYVGIIHLNQEQVVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLP LVSGKVDWCSIKFSTSQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHN SKFYAVNGFLDLNSKSLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFL HKRHYKNKKESCTSHGVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKD QLGPIMQQFAIPALKILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEG TLTKMKKNLISNAALCQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSND MHTLRKMSVRSKRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLK SEKFINVRSLEMILGYEFKDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIY FYNKYPECTPELLTDLRSASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKH RFTGPSHGWEAGIGLPKVLGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVER DPVKLLQEFCDRRSYSRSYTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKL LLEDLKAIVP