- Transcript BART1_0-u33637.013
- Transcript IDBART1_0-u33637.013
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84473806 | 84473367 | + |
| chr5H | 2 | 84474019 | 84473884 | + |
| chr5H | 3 | 84476028 | 84475935 | + |
| chr5H | 4 | 84477467 | 84477275 | + |
| chr5H | 5 | 84477710 | 84477550 | + |
| chr5H | 6 | 84479142 | 84478592 | + |
| chr5H | 7 | 84480117 | 84479843 | + |
| chr5H | 8 | 84480655 | 84480237 | + |
| chr5H | 9 | 84480831 | 84480728 | + |
| chr5H | 10 | 84483365 | 84483169 | + |
| chr5H | 11 | 84483994 | 84483785 | + |
| chr5H | 12 | 84490180 | 84489767 | + |
| chr5H | 13 | 84491799 | 84491518 | + |
| chr5H | 14 | 84493205 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.378389 | 0.0944463 | 1.69927 |
| morex | LEA | 0 | 0 | 0.00000000050572 |
| morex | EPI | 0.190472 | 0.00061608 | 0 |
| morex | ROO | 0.000000100779 | 0 | 0.00000000250961 |
| morex | ROO2 | 0.411361 | 0.584598 | 0.75261 |
| morex | NOD | 0.00316095 | 0 | 1.22172 |
| morex | RAC | 0 | 0.430819 | 0 |
| morex | INF1 | 0 | 0.0000000117397 | 0 |
| morex | INF2 | 0 | 0 | 0.962405 |
| morex | CAR5 | 0.000000742448 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0.090804 |
| morex | LOD | 0 | 0 | 1.0717 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.00000000698117 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +3 | 0.0 | 1581 | 789/1145 (69%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+3 | 0.0 | 781 | 461/1125 (41%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +3 | 0.0 | 1693 | 854/1144 (75%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4200 bp)
>BART1_0-u33637.013 4200 150831_barley_pseudomolecules AAAGTAGGTTTTTTCTTAAATAATATGGGCATAAGTTGCTCTATTTATGTAACATAATAA ACTATGATGAAATTTAGCATCTATATTTAGTCCAAGTGGAAGTTGAAGTAATAATAATAT CGTACGATTTGCTTTTCTTATTAAATACAGCCATGTCTGCACAGTTGGAAAGTTGCTATA CAATTGTTTTCACATTTTGTTTTTCCCTGGCCTTCTGTTTGTGTTGGTGCGATATAGTAG TTTTTTGGATATGCATGGCCTTGTCTTCTAAGTTTTAACACCTTCAATAACCTAACATAT TTACATTCTCTTAGCATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAA ATGCGAAGAAAGGGATATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTG GAGTATGGCTAGCGGCAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTAT CTTTCTGGGGTGAAGAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAG AAGTATACAGGGAACTCTCATGTTTTTCAGAGAGAGGTCATATTGGTAAAGATTTTGAAG CTGATTTGCAAGATGGGTTATTGACACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGG AATACAGGTGGCACATGCAAGACATAAGATGCATTGTATTTGTCGAGAGAGTTGTTACAA GCATTGTGTTGGAGTCTCTCCTGTCCATTATCAATCAAATGCCTGGGTGGATTATTAAAC ACATTGCAGGAAACAGACCTATGTTGCACAACCAGAGTAGAAATAAACAAACGGAAATTG TTGACGCCTTTAAAGGAGGAAAGGTACATATAATTGTGACCACACAAGTATTGGAGGAGG GGCTGAATGTGCCAGGTTGTCACTTAGTAATTCGCTTTGATCCACCAACGACTGGGCGCA GCTTTATACAGTCACGTGGTCGAGCTCGGATGCCAAACTCTGAATATGTTTTACTTGTTA GAAGGGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGA TGCGGGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGT TGCAGGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTG TCCAGTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAGTCTGTTTTATGTACCT TAAATTATGGTTTCCTTCTGTTTCATATCACAAATCATTTTCTGGCACAAGTATCTTATG TTTCTCACGGATAATATCTCTGTCTCAGATACTTTACACCTCTTCCGAGATTCATTATTG ACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTA ATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAAT TACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAG AAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGG AATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTT CAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTGAAAT GTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATG CTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGG CCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCA GTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGC TACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGT ATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGC AAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTC ATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGC ACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGACTCA GTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATT TCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGT TGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCT TCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGA AAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAG CAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGG ATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCTTCAGCATG AGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGG CCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGA TCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCA ATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTG AGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAA AATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTAT TAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCA AGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGCTGGCACTA CTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCTCTTCACTA TATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGATCTTAGATCTG CTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAACAAGCACA TTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAGAATTTTACTA AGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTACCCAAGGTTC TTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAG AGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTG AGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTT ACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGA CTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGA AGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGATGAT GCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTT TTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGT GAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCAT GGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAAT CTTGAGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTATCTT TTATTTTTTGAGCGGGGGTACCTTTTGTAGGGCTGGTAATTGTTTTTTTTAAATGGCAGG
Protein Sequence (668 aa)
>BART1_0-u33637.013 668 150831_barley_pseudomolecules MKYVGIIHLNQEQVVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLV SGKVDWCSIKFSTSQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSK FYAVNGFLDLNSKSLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHK RHYKNKKESCTSHGVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQL GPIMQQFAIPALKILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTL TKMKKNLISNAALCQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMH TLRKMSVRSKRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSE KFINVRSLEMILGYEFKDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFY NKYPECTPELLTDLRSASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRF TGPSHGWEAGIGLPKVLGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVERDP VKLLQEFCDRRSYSRSYTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKLLL EDLKAIVP