- Transcript BART1_0-u33637.010
- Transcript IDBART1_0-u33637.010
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84465569 | 84465564 | + |
| chr5H | 2 | 84473806 | 84473681 | + |
| chr5H | 3 | 84474019 | 84473884 | + |
| chr5H | 4 | 84476025 | 84475935 | + |
| chr5H | 5 | 84478810 | 84478592 | + |
| chr5H | 6 | 84479142 | 84478916 | + |
| chr5H | 7 | 84480117 | 84479843 | + |
| chr5H | 8 | 84480655 | 84480237 | + |
| chr5H | 9 | 84480831 | 84480728 | + |
| chr5H | 10 | 84483365 | 84483169 | + |
| chr5H | 11 | 84483994 | 84483785 | + |
| chr5H | 12 | 84490180 | 84489767 | + |
| chr5H | 13 | 84491799 | 84491518 | + |
| chr5H | 14 | 84493200 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.37321 | 0.944199 | 1.83903 |
| morex | ETI | 3.05345 | 0.00000821641 | 0.564864 |
| morex | LEA | 0.0414374 | 0.20116 | 0.00758499 |
| morex | EPI | 1.80825 | 4.20117 | 3.7812 |
| morex | ROO | 3.45713 | 0 | 0.799865 |
| morex | ROO2 | 6.13766 | 4.10118 | 2.40843 |
| morex | NOD | 2.29707 | 1.84101 | 3.48375 |
| morex | RAC | 8.97396 | 8.72885 | 10.281 |
| morex | INF1 | 0.834083 | 6.75427 | 0.056425 |
| morex | INF2 | 2.55564 | 9.59062 | 3.13134 |
| morex | CAR5 | 4.0713 | 0.549729 | 2.05633 |
| morex | CAR15 | 0.00268292 | 0.857256 | 0.525183 |
| morex | LEM | 7.10677 | 6.20911 | 7.38159 |
| morex | LOD | 10.383 | 7.54497 | 9.62245 |
| morex | PAL | 6.47168 | 7.1796 | 9.47561 |
| morex | SEN | 0 | 0.550292 | 2.33532 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1269 | 628/879 (71%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 629 | 362/856 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.1.p | +1 | 0.0 | 1358 | 685/877 (78%) | pacid=32792173 transcript=Bradi1g15440.1 locus=Bradi1g15440 ID=Bradi1g15440.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3425 bp)
>BART1_0-u33637.010 3425 150831_barley_pseudomolecules CCAAAGCATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAG AAAGGGATATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGG CTAGCGGCAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGG GGTGAAGAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATAC AGGGAACTCTCATGTTTTTCAGAGAGAGGTCATATTGGTAAAGATTTTGAAGCTGATTTG CAAGATGGGTTATTGACACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGGAATACAGG GGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGG GAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCAG GGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCAG TTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAATACTTTACACCTCTTCCGAGA TTCATTATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTG CAGACTGTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCC TGCCGAGAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTT CCATGTGAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTAC TTCCCAGAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGC TATAAGATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTA GCTGTGAAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCG CAAGATAATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAG GTAGTTATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCAT TCTGAGGTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTC TACCTGCTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACC TCGCAAGTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTT GATTTACTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTT TGCACCCCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAA TCTCTTCTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGG CATGGACTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAA GTGCGGAATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACAT GGTGTTGAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACT TTGTACAGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCT GCAAAGTTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAG ATTCTAGAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAA ACCCTTGGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAG CTTCAGCATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTA TGCCAGCTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCA AAAGGTTGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTT TTAAGCTCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCA GATACAGTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTT GTTTTCCTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGG AAGATTGTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGT TATGAGTTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACT GCTGGCACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCAT CTCTTCACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGAT CTTAGATCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTA AACAAGCACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAG AATTTTACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTA CCCAAGGTTCTTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAG TATGACAAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCG GAGACGGTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTAT AGCAGGTCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAG GTAGAAGGGACTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAG CTTGCAGCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATT TGCAGATGATGCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGT AGGTAGCCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAAT CATTGCTTGTGAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTC TCAGAACCATGGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTG TAAGCACAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTG CATGTATCTTTTATTTTTTGAGCGGGGGTACCTTTTGTAGGGCTGGTAATTGTTTTTTTT AAATG
Protein Sequence (1015 aa)
>BART1_0-u33637.010 1015 150831_barley_pseudomolecules PKHLKVLKANLHGSSRKNAKKGISKLHKAFLYCTANLGVWLAAKAAEIHSTTNEQFLSFW GEELDKNVEGFVRSYSEEVYRELSCFSERGHIGKDFEADLQDGLLTPKVHCLVQFLLEYR GDAEALSKTVKFLASGQMMREASLKLASTMCQPLENTLLQGEYYRVESTGATVTMNSSVQ LIYFFCSKLPSDEYFTPLPRFIIDKELRTCTLYLPNSSPVQTVNAEGEVSALKKAVCLKA CRELHAVGALTDYLLPEFGFPCEEEPDIVVEKYQHEQPVYFPEEFVYNWSSFSRLGIYYC YKISVEGCLKTTYCPNDILLAVKCDLGPEFVSTSLQLFGAQDNASLAMKYVGIIHLNQEQ VVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLVSGKVDWCSIKFST SQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSKFYAVNGFLDLNSK SLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHKRHYKNKKESCTSH GVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQLGPIMQQFAIPALK ILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTLTKMKKNLISNAAL CQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMHTLRKMSVRSKRIA DTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSEKFINVRSLEMILG YEFKDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFYNKYPECTPELLTD LRSASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRFTGPSHGWEAGIGL PKVLGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVERDPVKLLQEFCDRRSY SRSYTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKLLLEDLKAIVP