- Transcript BART1_0-u33637.007
- Transcript IDBART1_0-u33637.007
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84465569 | 84465563 | + |
| chr5H | 2 | 84473806 | 84473681 | + |
| chr5H | 3 | 84474019 | 84473884 | + |
| chr5H | 4 | 84476025 | 84475935 | + |
| chr5H | 5 | 84479142 | 84478592 | + |
| chr5H | 6 | 84480117 | 84479843 | + |
| chr5H | 7 | 84480655 | 84480237 | + |
| chr5H | 8 | 84480831 | 84480728 | + |
| chr5H | 9 | 84483365 | 84483169 | + |
| chr5H | 10 | 84483994 | 84483785 | + |
| chr5H | 11 | 84490180 | 84489767 | + |
| chr5H | 12 | 84491799 | 84491518 | + |
| chr5H | 13 | 84493232 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.481763 | 0 | 0 |
| morex | ETI | 2.4339 | 5.2596 | 4.26163 |
| morex | LEA | 0 | 0 | 0.0524501 |
| morex | EPI | 1.65725 | 0.00171268 | 0.791739 |
| morex | ROO | 0 | 0 | 1.28777 |
| morex | ROO2 | 0.139366 | 0.000211094 | 0.00000000107774 |
| morex | NOD | 1.61506 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 2.31411 | 0 | 0.00000171139 |
| morex | INF2 | 0.00991684 | 0.0000000810757 | 1.88445 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0.877889 | 0 | 0 |
| morex | LEM | 0.0000000429445 | 0 | 0.0000000688533 |
| morex | LOD | 0 | 0.594441 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.00000000394686 | 0.75823 | 0.000000237759 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +2 | 0.0 | 1249 | 628/914 (69%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+2 | 0.0 | 610 | 362/891 (41%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +2 | 0.0 | 1338 | 685/912 (75%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3563 bp)
>BART1_0-u33637.007 3563 150831_barley_pseudomolecules ACCAAAGCATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAA GAAAGGGATATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATG GCTAGCGGCAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTG GGGTGAAGAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATA CAGGGAACTCTCATGTTTTTCAGAGAGAGGTCATATTGGTAAAGATTTTGAAGCTGATTT GCAAGATGGGTTATTGACACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGGAATACAG GGGGGATGCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCG GGAAGCATCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCA GGGAGAATATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCA GTTGATTTATTTTTTCTGCTCGAAGCTCCCATCTGATGAGTCTGTTTTATGTACCTTAAA TTATGGTTTCCTTCTGTTTCATATCACAAATCATTTTCTGGCACAAGTATCTTATGTTTC TCACGGATAATATCTCTGTCTCAGATACTTTACACCTCTTCCGAGATTCATTATTGACAA GGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTAATGC AGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTACA CGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAGAAGA ACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGGAATT TGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTTCAGT AGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTGAAATGTGA TTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATGCTAG TCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGGCCAG AAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCAGTAA TGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGCTACC CTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGTATGT TGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGCAAAC AAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTCATAA TAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGCACCT TCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGACTCAGTCT AACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCCT CCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGTTGCC ACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCTTCTC GATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGA TCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAGCAGT AACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGGATTC TTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCTTCAGCATGAGGG GACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGGCCTG CAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCAT TCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCAATGA TATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTGAGGC ATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAAAATC ATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTATTAAA ATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCAAGGA TACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGCTGGCACTACTGC ATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCTCTTCACTATATA TTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGATCTTAGATCTGCTTC CGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAACAAGCACATTCT TCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAGAATTTTACTAAGCA CCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTACCCAAGGTTCTTGG GGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGT GGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCG TGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACAC AAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTAC CTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTT GCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGATGATGCAA TACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGA AGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGTGAAT ATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCATGGTA CAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAATCTTG AGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTATCTTTTAT TTTTTGAGCGGGGGTACCTTTTGTAGGGCTGGTAATTGTTTTTTTTAAATGGCAGGATGC ATTGTTAAGAAGAAAAGATCTGT
Protein Sequence (668 aa)
>BART1_0-u33637.007 668 150831_barley_pseudomolecules MKYVGIIHLNQEQVVMARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLV SGKVDWCSIKFSTSQVYVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSK FYAVNGFLDLNSKSLLHLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHK RHYKNKKESCTSHGVELPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQL GPIMQQFAIPALKILEAVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTL TKMKKNLISNAALCQLACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMH TLRKMSVRSKRIADTVEALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSE KFINVRSLEMILGYEFKDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFY NKYPECTPELLTDLRSASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRF TGPSHGWEAGIGLPKVLGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVERDP VKLLQEFCDRRSYSRSYTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKLLL EDLKAIVP