- Transcript BART1_0-u33637.003
- Transcript IDBART1_0-u33637.003
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84465569 | 84465084 | + |
| chr5H | 2 | 84473806 | 84473681 | + |
| chr5H | 3 | 84474019 | 84473884 | + |
| chr5H | 4 | 84476025 | 84475935 | + |
| chr5H | 5 | 84477467 | 84477275 | + |
| chr5H | 6 | 84477710 | 84477550 | + |
| chr5H | 7 | 84478810 | 84478592 | + |
| chr5H | 8 | 84479142 | 84478916 | + |
| chr5H | 9 | 84480117 | 84479843 | + |
| chr5H | 10 | 84480655 | 84480237 | + |
| chr5H | 11 | 84480831 | 84480728 | + |
| chr5H | 12 | 84483365 | 84483169 | + |
| chr5H | 13 | 84483994 | 84483785 | + |
| chr5H | 14 | 84490180 | 84489767 | + |
| chr5H | 15 | 84491799 | 84491518 | + |
| chr5H | 16 | 84496199 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.00561821 | 0.129603 |
| morex | ETI | 0.228775 | 0 | 0 |
| morex | LEA | 0 | 0.26973 | 0 |
| morex | EPI | 0.398906 | 0 | 0.075871 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0.103597 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.00000132888 | 0.305163 | 0.0967827 |
| morex | INF1 | 0.0000161429 | 0.248627 | 0 |
| morex | INF2 | 0 | 0.399204 | 0.897703 |
| morex | CAR5 | 0.115376 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.00000342291 | 0 | 0.137473 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1609 | 790/1110 (71%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 804 | 463/1093 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +1 | 0.0 | 1720 | 855/1109 (77%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (7258 bp)
>BART1_0-u33637.003 7258 150831_barley_pseudomolecules GGTAAGTCTTAGACACAAGTCTTCTCAGTTGCTGAGAAACTTGCTCAGCTGTCAGCGTAC CATTTGTGACTTTTACCAGTCCCGTTCTTGAACTCTCAAGATTGTGGGGGTACAAGGACT GATGTAAATCATGGTGTCTCGAAGAACATAAGTCTATTCTGGTAGACACCATATATGTTG AGCACCGGTTTGGGAGCTAACAGAAGTGGATAAGCTGCCTCGTCGTGTCCTGGTTTCTGA CAAATATCACATAGTGCCGTGGTGCAATCCACGACAAAGTGGCCAGGTACCCCACGTCTA TAACATGTCAGCTTTTCTTTCTTGCGAGCCGCCTTATTGGCCCGCGCCATGTCTCTATCC TCAGTCGTCAACTTGGGTGCTATGACTTCTGCAGGCAAAGTAGAACTGGCAGTGTTAACC GCCACCACATCAGTTGTCGTCGGTGTTACTTCCTTCCACTTCGGAACAGAGTTATTCTGA CCAAAGCATTTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAG AAAGGGATATCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGG CTAGCGGCAAAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGG GGTGAAGAACTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATAC AGGGAACTCTCATGTTTTTCAGAGAGAGGTCATATTGGTAAAGATTTTGAAGCTGATTTG CAAGATGGGTTATTGACACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGGAATACAGG CACATGCAAGACATAAGATGCATTGTATTTGTCGAGAGAGTTGTTACAAGCATTGTGTTG GAGTCTCTCCTGTCCATTATCAATCAAATGCCTGGGTGGATTATTAAACACATTGCAGGA AACAGACCTATGTTGCACAACCAGAGTAGAAATAAACAAACGGAAATTGTTGACGCCTTT AAAGGAGGAAAGGTACATATAATTGTGACCACACAAGTATTGGAGGAGGGGCTGAATGTG CCAGGTTGTCACTTAGTAATTCGCTTTGATCCACCAACGACTGGGCGCAGCTTTATACAG TCACGTGGTCGAGCTCGGATGCCAAACTCTGAATATGTTTTACTTGTTAGAAGGGGGGAT GCAGAGGCCCTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGGGAAGCA TCTCTGAAGCTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCAGGGAGAA TATTACCGTGTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCAGTTGATT TATTTTTTCTGCTCGAAGCTCCCATCTGATGAATACTTTACACCTCTTCCGAGATTCATT ATTGACAAGGAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACT GTTAATGCAGAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGA GAATTACACGCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGT GAAGAAGAACCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCA GAGGAATTTGTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAG ATTTCAGTAGAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTG AAATGTGATTTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGAT AATGCTAGTCTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTT ATGGCCAGAAGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAG GTCAGTAATGCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTG CTGCTACCCTTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAA GTGTATGTTGGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTA CTGCAAACAAAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACC CCTCATAATAGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTT CTGCACCTTCGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGA CTCAGTCTAACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGG AATTTCCTCCACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGGTGTT GAGTTGCCACCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTTGTAC AGCTTCTCGATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAG TTGAAAGATCAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTCTA GAAGCAGTAACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCCTT GGGGATTCTTTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCTTCAG CATGAGGGGACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCCAG CTGGCCTGCAACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAGGT TGGATCATTCCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAAGC TCCAATGATATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATACA GTTGAGGCATTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTC CTAAAATCATTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGATT GTATTAAAATCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATGAG TTCAAGGATACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGCTGGC ACTACTGCATGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCTCTTC ACTATATATTTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGATCTTAGA TCTGCTTCCGTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAACAAG CACATTCTTCATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAGAATTTT ACTAAGCACCGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTACCCAAG GTTCTTGGGGATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGAC AAAGAGGTGGTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACG GTTGAGCGTGACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGG TCTTACACAAAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAA GGGACTACCTACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCA GCGAAGTTGCTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGA TGATGCAATACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAG CCTTTTGAAGTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGC TTGTGAATATTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAA CCATGGTACAGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCA CAATCTTGAGTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTA TCTTTTATTTTTTGAGCGGGGGTACCTTTTGTAGGGCTGGTAATTGTTTTTTTTAAATGG CAGGATGCATTGTTAAGAAGAAAAGATCTGTTTGGTTAATTGTGAAAAACCAAGCGAGAA CCAGATTGCCCAGTTAATTTTGATAAACCTGGTGAAGAACCTTCACAACTGTGGAGAGGC ACACAAGATACCACTCACATCACTGCAAGGAGGACCTTAGCAAGACAACATGTAAGCATC ATCATCATCACTTCTCTCTTCGTGACGTCATTGCCATCCTTGAACATTGAGCGAACAGCC GAAAGGCGTTGTAGTTGTGGTGTTGTGAACTGTTTGCCGACAGGTTGTATCAGCCGCTTG TCTCTTCTTCTATGATATTGATGCACCTCTAGTCGCTCTCGAGCCGCTTGGCTCTTCTAT GATATTGATATACACCTCTCCATGGTGTATCCTTGAAAATATGCTATATTTATATAGTGA GTTATGACTGAACACGGCCAAATGCATTTTACAGCATTCGGGCACAGACCAACATATATC TGCATCTGCATCAGGAAAGTAAGCATAACAAGTTTTGCAAACTGCTGAACAATAGTCTGA TCGACTTTAGTTGGATTTAGTGCCAGGCATCCATCTACTGCTGAGAAGATTATACACTAG CAAGCTTGAGATGTGTATGGAACTTTCGATCCATATCTACAACCAAGCTCTTTTTCACAG TAATCTATACCAATCTATAATAACCCAACAAAGAAGCAAAACCTTGCCATGTATGGAGCT TTCGATCCAACAGATACATTGGCTGGAGCATGATGGCCAGACTGGATTCTTCGTAATGAC TTTGGTACTACCATTATTCTAGTATATATACAATTTTTTCTTGTGGGGATACACCAAGCA GCTTATGTATACTACCATGACCAAATATGTGTGAGTTGATCTTTGAAACAGGTAGAAGCA GTCTGAAGCAATTCAGTTGAGCTTCAAAACAGGTCTGTTCGGATTCCCCGCAAGCCGGGC TCGCAAATCATCCACGAAGCCATCCTCATAGCGACCCTTGAGCAAAACTTGCTTGAGGCT CGGGAGAGACGGCAGCCCTGCAAACAAAACTGTGTTGGCTTTGTAACGCCAGCCACGGAA CTGTAGCAGCTCAATCTTTGGGGCCGCCCCTCCATGGAACTCCACAGATTTGAGCTTGTC TAGGAGGCTGAGCTCCAGCACCGTCAGACTCGGGAATGCCGCGTCCCGGTTGAGACTGAA ACGAAGCTCTTCGCCAGCGAACGAGTGCCTCAACAGACGCAGTATGGCCAGGTTTGGCAA ATTGCCGAGGACCTGCATGGCTGCATCAACCTCCAGTATCCTACTGCTCCGTAGCTCCAT CTTCACGAGATTCCGGAGTGCCTCCATCCAGTCGGGCAATTTCACCAGGTTACCATACAG CTTCAGGCTCTGTAGTTTTTTCGGAGGTGATGATAGGGCATCCAAGCAGCCAGATAAACC AGGGTTTCCCTCTGACCGCACTAACAACGATTCCAGGCAACTGAGCTTTGAAAGGGCTGA ACACAAATCTTGAGAGTTTTTCCTGTTGATGCCGGTCACTCTTAACTTCCGCAGCCTAGT GAGGCTTCTTAGGTCATTTAGAACAGCCTTACCCCTTGATCCTGACACATTCACAACACC CATTGTGTCCAGGGCTTTCAGTCTACGAGTCCCTCTTGGCACTTCAACACCATTTGGACT TCGGCGCGTCGTGGCAGAAGGTAATTTATTGCAGCAACACGCAGTGCATGCATCACGCCT GTTAGGGTCACCATCCATATCCATGACCTCTTTCAGAACCTGAGGTGCGCAGCATCCCAC ACAGAATGCCATTGATGACAAGGCCAAAGTGCATAGGGTATCTGCATATGTTTCATGTGT ACCACCATCGTTACTTCCAATGCCCCCAGCACGAATATGCTCTAGCTTGCTAAGCTTGAT AATGGTCCTCGGTAGTTCAATTATGCTTGTATATGTAACGTCTAGTGTTTGCAGCTGCCT CAGGTTCCCTAACGAGTCTGGCAAGTGATAAATATCATCACATCCTCTTAAGGAAAGGAA CCTTAGATGAAGAAGCTTCCCAATGCCCGTAAGATGATGATCAACTAGACCTGATGTCCC CTCTAGGTCCAGCACTCGCAGCAACCTCATCTTCTCAGACATGAAAAATGGCCTCCACTT CCCAAACACCGTTAATGATCTTATACAGGACATGTCCACTATGCTCTTGAAGTCGCACTG ATCTCCCTTACAGCTACTACTTATGGCAAGATGGCGGATTGTTCCCCGGTTGTTTAATCC GCAGCCTTCCTCCAATGTGAAAACAAGATTATCCTCCGCTGATTTTGAGATACCAATTTC ACGAATGAGATCATGAACTTGGCAGGAGTCAACTCCTCTTCTACTATGAATGGATTCTTG AGATGGTAAGATCATGCTCCTGCTTATGAGTTCCATGAAATAGCTCTCCGCTATTTCCTC CGCGGACTTGCCACGCAACTCCCTTGAGTAGCCCTCTGCAATCCACCGACGCACCAGACG TCTCTGGCTAACCTTGTCATCTTGGGGGAAGATGGAGAAATACAGCATACATGACTTGAG ATGGTAGGGTAAACCATCGTAACTTTTGTTAAGGACTGCTGCTATCCTTTCAAGCTCTGG ATTCATCTCCAACTCGGCACTAATATGGTCATTCAATTTCATCCACTCCAAAGCGGTTTT AGGTTGGTTTGCCAAGAAGCCACCTATGGTAACAATTGCAAGGGGAAGTCCATCACACTT CTTTAAGATCAGATTTGCTTGTTCAACCAACTCTGGATATTCATCATTGAGATATGTAAT CTTGTGAAATACCTGAAATGTGTTCACTTCAAATTTTTAGTTGCCACAAAACTAAATTAG CTGCAAGCCTAATAACGGAGTTTGTGCTTTAAAAGTCTATTAATAAAGGTAAATTGCACA GTTAGTTCTTTAATTAAGCATGCAAGTAGATACTAGCTAGGTACATGAAATACTCCAG
Protein Sequence (1012 aa)
>BART1_0-u33637.003 1012 150831_barley_pseudomolecules MQDIRCIVFVERVVTSIVLESLLSIINQMPGWIIKHIAGNRPMLHNQSRNKQTEIVDAFK GGKVHIIVTTQVLEEGLNVPGCHLVIRFDPPTTGRSFIQSRGRARMPNSEYVLLVRRGDA EALSKTVKFLASGQMMREASLKLASTMCQPLENTLLQGEYYRVESTGATVTMNSSVQLIY FFCSKLPSDEYFTPLPRFIIDKELRTCTLYLPNSSPVQTVNAEGEVSALKKAVCLKACRE LHAVGALTDYLLPEFGFPCEEEPDIVVEKYQHEQPVYFPEEFVYNWSSFSRLGIYYCYKI SVEGCLKTTYCPNDILLAVKCDLGPEFVSTSLQLFGAQDNASLAMKYVGIIHLNQEQVVM ARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLVSGKVDWCSIKFSTSQV YVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSKFYAVNGFLDLNSKSLL HLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHKRHYKNKKESCTSHGVE LPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQLGPIMQQFAIPALKILE AVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTLTKMKKNLISNAALCQL ACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMHTLRKMSVRSKRIADTV EALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSEKFINVRSLEMILGYEF KDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFYNKYPECTPELLTDLRS ASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRFTGPSHGWEAGIGLPKV LGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVERDPVKLLQEFCDRRSYSRS YTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKLLLEDLKAIVP