- Transcript BART1_0-u33637.002
- Transcript IDBART1_0-u33637.002
- Gene IDBART1_0-u33637
Barley RTD
Exon Structure of BART1_0-u33637.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 84465369 | 84464265 | + |
| chr5H | 2 | 84465569 | 84465478 | + |
| chr5H | 3 | 84473806 | 84473681 | + |
| chr5H | 4 | 84474019 | 84473884 | + |
| chr5H | 5 | 84476025 | 84475935 | + |
| chr5H | 6 | 84477467 | 84477275 | + |
| chr5H | 7 | 84477710 | 84477550 | + |
| chr5H | 8 | 84478810 | 84478592 | + |
| chr5H | 9 | 84479142 | 84478916 | + |
| chr5H | 10 | 84480117 | 84479843 | + |
| chr5H | 11 | 84480655 | 84480237 | + |
| chr5H | 12 | 84480831 | 84480728 | + |
| chr5H | 13 | 84483365 | 84483169 | + |
| chr5H | 14 | 84483994 | 84483785 | + |
| chr5H | 15 | 84490180 | 84489767 | + |
| chr5H | 16 | 84491799 | 84491518 | + |
| chr5H | 17 | 84496026 | 84492482 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.214455 | 0 | 0.288456 |
| morex | ETI | 0.0000159465 | 0 | 0 |
| morex | LEA | 0 | 0.205045 | 0 |
| morex | EPI | 0.0741376 | 0.0000000000917973 | 0.327433 |
| morex | ROO | 0.0768941 | 0.186353 | 0 |
| morex | ROO2 | 0 | 0 | 0.0853297 |
| morex | NOD | 0 | 0.0654511 | 0 |
| morex | RAC | 0.0000000743679 | 0.0000000002286 | 0.0000367493 |
| morex | INF1 | 0 | 0.132417 | 0.0000000113385 |
| morex | INF2 | 0.717044 | 0 | 0 |
| morex | CAR5 | 0.0000992927 | 0 | 0.423691 |
| morex | CAR15 | 0 | 0.000000000570117 | 0.0177415 |
| morex | LEM | 0.0199253 | 0 | 0.409307 |
| morex | LOD | 0.168207 | 0.387572 | 0.415125 |
| morex | PAL | 0.04034 | 0 | 0.521145 |
| morex | SEN | 0.213415 | 0 | 0.10095 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g38740.1 | +1 | 0.0 | 1609 | 790/1110 (71%) | protein|Dicer, putative, expressed |
| TAIR PP10 | AT3G03300 @ ARAPORT AT3G03300.3 @ TAIR |
+1 | 0.0 | 804 | 463/1093 (42%) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388 |
| BRACH PP3 | Bradi1g15440.2.p | +1 | 0.0 | 1720 | 855/1109 (77%) | pacid=32792174 transcript=Bradi1g15440.2 locus=Bradi1g15440 ID=Bradi1g15440.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (7796 bp)
>BART1_0-u33637.002 7796 150831_barley_pseudomolecules GTCGGCGTCACTTGAAGACCCGGCTGGCGGTCCTCCTGTCCATCAAGCTGCTCCACGCGG ACCGGCGAGTCCACATCGTAATGACGTGCCAACATGCTCGGCCGCGCAACAAGAGAGTGG GGGGACTCATGTCCATAACCGGTGGCTGGTTCTTCATGTGTCTCCTTCACACCATATTCC CCTCATAGGTGACTCGGCGTAGATATCACCTCAAACGATCCGAACCGGAGGGTGGCCATG GGAGTAGTCGTAGGTGCAGCCCCGCCATTAACGGTTTATCAGTAGAAGTAGATGATGAAG GGTTTCTGTCCTCCTTGGACCTCTCCGAGTGCTCATCCTGATTCGCATCTCCCTGGTCCC CATCACGATCATCTCCATCAGCCATGTGAACATCACCATCATGTGACTGTGGTTGGGTTA CCTCCTCCACCTCCACGTTGAGATCATAATGCACACCGTCATATGACCATGGTGCGAAAT TAGGTATATACTCAACATCCAGCACAGTCACAAGCAATCTGGCGATCCCCCGTTTGCGCG TGAAAGGCATGTCTACTTTCTCGGTCTTACCAACCAGTGAGCCAAGGCTCCAGACAATAA GGAAGTCATTGAGCAGAATCTCTGGAATGCCTGAAAATCTGATCCAAACCTTCTCTAACC GTGTACCCTGTGGTTTCGGTTTTTTACATTCCTCAAACTTTAACAAGCATTTGCTCCCAC TCACCTTGCTGACCCGGAATGTCAACAAACGTGGAAGATCCTCTCTTCTAGGAAACTCCA CTCAATAGATCTGCTCATCTACTCTAGCCGGGGCCCATTGGTAAGTCTTAGACACAAGTC TTCTCAGTTGCTGAGAAACTTGCTCAGCTGTCAGCGTACCATTTGTGACTTTTACCAGTC CCGTTCTTGAACTCTCAAGATTGTGGGGGTACAAGGACTGATGTAAATCATGGTGTCTCG AAGAACATAAGTCTATTCTGGTAGACACCATATATGTTGAGCACCGGTTTGGGAGCTAAC AGAAGTGGATAAGCTGCCTCGTCGTGTCCTGGTTTCTGACAAATATCACATAGTGCCGTG GTGCAATCCACGACAAAGTGGCCAGGCAAAGTAGAACTGGCAGTGTTAACCGCCACCACA TCAGTTGTCGTCGGTGTTACTTCCTTCCACTTCGGAACAGAGTTATTCTGACCAAAGCAT TTAAAAGTCCTCAAGGCAAATCTACATGGATCGTCTCGGAAAAATGCGAAGAAAGGGATA TCAAAATTACACAAGGCATTCTTATATTGCACGGCTAATCTTGGAGTATGGCTAGCGGCA AAGGCTGCTGAGATACACTCAACAACTAACGAACAATTCTTATCTTTCTGGGGTGAAGAA CTGGATAAGAATGTTGAAGGCTTTGTTAGAAGCTATAGTGAAGAAGTATACAGGGAACTC TCATGTTTTTCAGAGAGAGGTCATATTGGTAAAGATTTTGAAGCTGATTTGCAAGATGGG TTATTGACACCTAAAGTTCATTGTCTTGTTCAGTTTCTTCTGGAATACAGGCACATGCAA GACATAAGATGCATTGTATTTGTCGAGAGAGTTGTTACAAGCATTGTGTTGGAGTCTCTC CTGTCCATTATCAATCAAATGCCTGGGTGGATTATTAAACACATTGCAGGAAACAGACCT ATGTTGCACAACCAGAGTAGAAATAAACAAACGGAAATTGTTGACGCCTTTAAAGGAGGA AAGGTACATATAATTGTGACCACACAAGTATTGGAGGAGGGGCTGAATGTGCCAGGTTGT CACTTAGTAATTCGCTTTGATCCACCAACGACTGGGCGCAGCTTTATACAGTCACGTGGT CGAGCTCGGATGCCAAACTCTGAATATGTTTTACTTGTTAGAAGGGGGGATGCAGAGGCC CTCTCTAAGACAGTGAAGTTCCTTGCAAGCGGGCAAATGATGCGGGAAGCATCTCTGAAG CTTGCATCTACTATGTGTCAACCACTAGAAAACACCTTGTTGCAGGGAGAATATTACCGT GTTGAATCTACTGGAGCAACCGTGACTATGAACTCAAGTGTCCAGTTGATTTATTTTTTC TGCTCGAAGCTCCCATCTGATGAATACTTTACACCTCTTCCGAGATTCATTATTGACAAG GAACTACGTACTTGCACCTTGTACCTTCCCAATAGCAGCCCTGTGCAGACTGTTAATGCA GAAGGAGAAGTTTCTGCCCTCAAAAAGGCAGTTTGTCTTAAGGCCTGCCGAGAATTACAC GCTGTCGGCGCCCTAACAGATTATCTGTTACCAGAATTTGGTTTTCCATGTGAAGAAGAA CCCGACATTGTTGTTGAGAAATACCAACACGAGCAGCCTGTGTACTTCCCAGAGGAATTT GTGTACAATTGGTCATCCTTTTCTCGTCTTGGAATATATTATTGCTATAAGATTTCAGTA GAAGGGTGCTTGAAAACAACTTATTGTCCAAATGACATACTTCTAGCTGTGAAATGTGAT TTGGGACCAGAGTTTGTCTCTACCTCACTTCAATTGTTTGGTGCGCAAGATAATGCTAGT CTTGCCATGAAATATGTGGGAATCATTCATCTGAATCAAGAACAGGTAGTTATGGCCAGA AGGTTTCAGACTACTATTCTTTCTTTGCTTATTAATAAAGACCATTCTGAGGTCAGTAAT GCTGTTAAATACTCCCATGAGATGCAAGTGTCCATTGGAATTGTCTACCTGCTGCTACCC TTAGTTTCTGGCAAAGTTGATTGGTGCAGTATCAAGTTCTCGACCTCGCAAGTGTATGTT GGCAGTAACAAGGATATCAGACATTGCCATTCTTGTAAACAAGTTGATTTACTGCAAACA AAAGATGGTCCTCTGTGCAGATGCATGCTTGAAAGTTCCATTGTTTGCACCCCTCATAAT AGCAAATTCTATGCTGTTAATGGGTTCCTTGACTTAAATTCCAAATCTCTTCTGCACCTT CGTGATGGCAGTGCCCTTACCTACATAAACTATTTCAAGACTAGGCATGGACTCAGTCTA ACACATGAAAATCAACCCCTGTTGGCAGCCAGGAGTCCTGTTGAAGTGCGGAATTTCCTC CACAAGCGCCATTATAAAAATAAAAAAGAATCGTGCACTTCACATGGTGTTGAGTTGCCA CCTGAGCTCTGCAGACTAGTCATGTCACCAGTCTCTACTAATACTTTGTACAGCTTCTCG ATTATTCCTTCTGTAATGTACCGCATCCAGTGTCTGCTTCTTTCTGCAAAGTTGAAAGAT CAACTGGGCCCAATAATGCAGCAGTTTGCCATACCAGCTCTGAAGATTCTAGAAGCAGTA ACAACCAAGGAATGCCAAGAGGAATTTTCACAGGAATCATTAGAAACCCTTGGGGATTCT TTCCTCAAGTACATCGCCACGCAACATCTGTATGTCAAACACAAGCTTCAGCATGAGGGG ACATTAACCAAGATGAAGAAAAACTTAATCTCGAATGCAGCTCTATGCCAGCTGGCCTGC AACAACAATCTTGTGGGTTACATTCAAGGGGAAGAGTTTAACCCAAAAGGTTGGATCATT CCAGGGCTTGGTTATGACATGTGTGGTAACAGCAAATTTTCCTTTTTAAGCTCCAATGAT ATGCACACTTTGAGGAAAATGTCTGTTAGAAGTAAGAGAATAGCAGATACAGTTGAGGCA TTGATTGGAGCCTACCTTGGTGCTGCGGGAGAACAGGCTGCATTTGTTTTCCTAAAATCA TTAGGATTGGATATAGGATTTCACAGCACTATTCCACTTGAAAGGAAGATTGTATTAAAA TCTGAAAAGTTCATCAACGTGAGAAGTTTGGAAATGATTCTTGGTTATGAGTTCAAGGAT ACTTCATTGTTGGTGGAAGCATTGACACATGGGTCATACCAGACTGCTGGCACTACTGCA TGCTATCAGAGGCTTGAGTTTCTCGGAGACGCTGTGTTGGACCATCTCTTCACTATATAT TTCTACAATAAGTACCCTGAATGTACTCCAGAATTGTTGACAGATCTTAGATCTGCTTCC GTTAACAACAATTGCTATGCGCATGCAGCTGCTAAAGCAGGACTAAACAAGCACATTCTT CATTCGTCATTGCCATTGCACGGAAGGATGGCTTACTACTTTGAGAATTTTACTAAGCAC CGATTTACAGGTCCATCACATGGTTGGGAAGCTGGCATTGGTCTACCCAAGGTTCTTGGG GATGTTATTGAATCATTAGCCGGTGCCATTTATCTTGACAGCAAGTATGACAAAGAGGTG GTTTGGAGAAGCATGAAAAAGCTATTGGAGCCTCTTGCGACACCGGAGACGGTTGAGCGT GACCCAGTGAAACTGCTGCAGGAATTTTGTGATCGCAGGTCTTATAGCAGGTCTTACACA AAGGTCCAGAAAGATGGAGTGTCTTCGGTGGTTGGGGAGGTACAGGTAGAAGGGACTACC TACTCAGCAACTGGAACTGGCCCTGATAAGGTTGTCGCAAAAAAGCTTGCAGCGAAGTTG CTGCTAGAAGATCTGAAGGCTATAGTACCATGACACGCTTGCATTTGCAGATGATGCAAT ACTGTATAGCTCCTTCCGACTTCACTTGTATTGTGACTAGCCTGTAGGTAGCCTTTTGAA GTTTTTGTGGGAGTATGCGTGTACTTGACAAATGTGCAGCTCAATCATTGCTTGTGAATA TTCAGACTATTGAACTGCACATCTGTGAAGTACGGGCATCGTCTCTCAGAACCATGGTAC AGACGATAATGCTACAGTATCCTTAGACTTCTACTTGTACAGTTGTAAGCACAATCTTGA GTGGAAAGCTGGAATATCTTTTTCTCTCCATCGGGCAGTGCAGTGCATGTATCTTTTATT TTTTGAGCGGGGGTACCTTTTGTAGGGCTGGTAATTGTTTTTTTTAAATGGCAGGATGCA TTGTTAAGAAGAAAAGATCTGTTTGGTTAATTGTGAAAAACCAAGCGAGAACCAGATTGC CCAGTTAATTTTGATAAACCTGGTGAAGAACCTTCACAACTGTGGAGAGGCACACAAGAT ACCACTCACATCACTGCAAGGAGGACCTTAGCAAGACAACATGTAAGCATCATCATCATC ACTTCTCTCTTCGTGACGTCATTGCCATCCTTGAACATTGAGCGAACAGCCGAAAGGCGT TGTAGTTGTGGTGTTGTGAACTGTTTGCCGACAGGTTGTATCAGCCGCTTGTCTCTTCTT CTATGATATTGATGCACCTCTAGTCGCTCTCGAGCCGCTTGGCTCTTCTATGATATTGAT ATACACCTCTCCATGGTGTATCCTTGAAAATATGCTATATTTATATAGTGAGTTATGACT GAACACGGCCAAATGCATTTTACAGCATTCGGGCACAGACCAACATATATCTGCATCTGC ATCAGGAAAGTAAGCATAACAAGTTTTGCAAACTGCTGAACAATAGTCTGATCGACTTTA GTTGGATTTAGTGCCAGGCATCCATCTACTGCTGAGAAGATTATACACTAGCAAGCTTGA GATGTGTATGGAACTTTCGATCCATATCTACAACCAAGCTCTTTTTCACAGTAATCTATA CCAATCTATAATAACCCAACAAAGAAGCAAAACCTTGCCATGTATGGAGCTTTCGATCCA ACAGATACATTGGCTGGAGCATGATGGCCAGACTGGATTCTTCGTAATGACTTTGGTACT ACCATTATTCTAGTATATATACAATTTTTTCTTGTGGGGATACACCAAGCAGCTTATGTA TACTACCATGACCAAATATGTGTGAGTTGATCTTTGAAACAGGTAGAAGCAGTCTGAAGC AATTCAGTTGAGCTTCAAAACAGGTCTGTTCGGATTCCCCGCAAGCCGGGCTCGCAAATC ATCCACGAAGCCATCCTCATAGCGACCCTTGAGCAAAACTTGCTTGAGGCTCGGGAGAGA CGGCAGCCCTGCAAACAAAACTGTGTTGGCTTTGTAACGCCAGCCACGGAACTGTAGCAG CTCAATCTTTGGGGCCGCCCCTCCATGGAACTCCACAGATTTGAGCTTGTCTAGGAGGCT GAGCTCCAGCACCGTCAGACTCGGGAATGCCGCGTCCCGGTTGAGACTGAAACGAAGCTC TTCGCCAGCGAACGAGTGCCTCAACAGACGCAGTATGGCCAGGTTTGGCAAATTGCCGAG GACCTGCATGGCTGCATCAACCTCCAGTATCCTACTGCTCCGTAGCTCCATCTTCACGAG ATTCCGGAGTGCCTCCATCCAGTCGGGCAATTTCACCAGGTTACCATACAGCTTCAGGCT CTGTAGTTTTTTCGGAGGTGATGATAGGGCATCCAAGCAGCCAGATAAACCAGGGTTTCC CTCTGACCGCACTAACAACGATTCCAGGCAACTGAGCTTTGAAAGGGCTGAACACAAATC TTGAGAGTTTTTCCTGTTGATGCCGGTCACTCTTAACTTCCGCAGCCTAGTGAGGCTTCT TAGGTCATTTAGAACAGCCTTACCCCTTGATCCTGACACATTCACAACACCCATTGTGTC CAGGGCTTTCAGTCTACGAGTCCCTCTTGGCACTTCAACACCATTTGGACTTCGGCGCGT CGTGGCAGAAGGTAATTTATTGCAGCAACACGCAGTGCATGCATCACGCCTGTTAGGGTC ACCATCCATATCCATGACCTCTTTCAGAACCTGAGGTGCGCAGCATCCCACACAGAATGC CATTGATGACAAGGCCAAAGTGCATAGGGTATCTGCATATGTTTCATGTGTACCACCATC GTTACTTCCAATGCCCCCAGCACGAATATGCTCTAGCTTGCTAAGCTTGATAATGGTCCT CGGTAGTTCAATTATGCTTGTATATGTAACGTCTAGTGTTTGCAGCTGCCTCAGGTTCCC TAACGAGTCTGGCAAGTGATAAATATCATCACATCCTCTTAAGGAAAGGAACCTTAGATG AAGAAGCTTCCCAATGCCCGTAAGATGATGATCAACTAGACCTGATGTCCCCTCTAGGTC CAGCACTCGCAGCAACCTCATCTTCTCAGACATGAAAAATGGCCTCCACTTCCCAAACAC CGTTAATGATCTTATACAGGACATGTCCACTATGCTCTTGAAGTCGCACTGATCTCCCTT ACAGCTACTACTTATGGCAAGATGGCGGATTGTTCCCCGGTTGTTTAATCCGCAGCCTTC CTCCAATGTGAAAACAAGATTATCCTCCGCTGATTTTGAGATACCAATTTCACGAATGAG ATCATGAACTTGGCAGGAGTCAACTCCTCTTCTACTATGAATGGATTCTTGAGATGGTAA GATCATGCTCCTGCTTATGAGTTCCATGAAATAGCTCTCCGCTATTTCCTCCGCGGACTT GCCACGCAACTCCCTTGAGTAGCCCTCTGCAATCCACCGACGCACCAGACGTCTCTGGCT AACCTTGTCATCTTGGGGGAAGATGGAGAAATACAGCATACATGACTTGAGATGGTAGGG TAAACCATCGTAACTTTTGTTAAGGACTGCTGCTATCCTTTCAAGCTCTGGATTCATCTC CAACTCGGCACTAATATGGTCATTCAATTTCATCCACTCCAAAGCGGTTTTAGGTTGGTT TGCCAAGAAGCCACCTATGGTAACAATTGCAAGGGGAAGTCCATCACACTTCTTTAAGAT CAGATTTGCTTGTTCAACCAACTCTGGATATTCATCATTGAGATATGTAATCTTGT
Protein Sequence (1012 aa)
>BART1_0-u33637.002 1012 150831_barley_pseudomolecules MQDIRCIVFVERVVTSIVLESLLSIINQMPGWIIKHIAGNRPMLHNQSRNKQTEIVDAFK GGKVHIIVTTQVLEEGLNVPGCHLVIRFDPPTTGRSFIQSRGRARMPNSEYVLLVRRGDA EALSKTVKFLASGQMMREASLKLASTMCQPLENTLLQGEYYRVESTGATVTMNSSVQLIY FFCSKLPSDEYFTPLPRFIIDKELRTCTLYLPNSSPVQTVNAEGEVSALKKAVCLKACRE LHAVGALTDYLLPEFGFPCEEEPDIVVEKYQHEQPVYFPEEFVYNWSSFSRLGIYYCYKI SVEGCLKTTYCPNDILLAVKCDLGPEFVSTSLQLFGAQDNASLAMKYVGIIHLNQEQVVM ARRFQTTILSLLINKDHSEVSNAVKYSHEMQVSIGIVYLLLPLVSGKVDWCSIKFSTSQV YVGSNKDIRHCHSCKQVDLLQTKDGPLCRCMLESSIVCTPHNSKFYAVNGFLDLNSKSLL HLRDGSALTYINYFKTRHGLSLTHENQPLLAARSPVEVRNFLHKRHYKNKKESCTSHGVE LPPELCRLVMSPVSTNTLYSFSIIPSVMYRIQCLLLSAKLKDQLGPIMQQFAIPALKILE AVTTKECQEEFSQESLETLGDSFLKYIATQHLYVKHKLQHEGTLTKMKKNLISNAALCQL ACNNNLVGYIQGEEFNPKGWIIPGLGYDMCGNSKFSFLSSNDMHTLRKMSVRSKRIADTV EALIGAYLGAAGEQAAFVFLKSLGLDIGFHSTIPLERKIVLKSEKFINVRSLEMILGYEF KDTSLLVEALTHGSYQTAGTTACYQRLEFLGDAVLDHLFTIYFYNKYPECTPELLTDLRS ASVNNNCYAHAAAKAGLNKHILHSSLPLHGRMAYYFENFTKHRFTGPSHGWEAGIGLPKV LGDVIESLAGAIYLDSKYDKEVVWRSMKKLLEPLATPETVERDPVKLLQEFCDRRSYSRS YTKVQKDGVSSVVGEVQVEGTTYSATGTGPDKVVAKKLAAKLLLEDLKAIVP