- Transcript BART1_0-u32165.010
- Transcript IDBART1_0-u32165.010
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 549098 | 548855 | + |
| chr5H | 2 | 549972 | 549420 | + |
| chr5H | 3 | 551456 | 551216 | + |
| chr5H | 4 | 552197 | 551697 | + |
| chr5H | 5 | 553129 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.42806 | 7.02066 | 8.14736 |
| morex | ETI | 4.68275 | 6.32744 | 4.01894 |
| morex | LEA | 5.40722 | 2.18647 | 5.10781 |
| morex | EPI | 3.693 | 5.34448 | 3.44837 |
| morex | ROO | 9.22141 | 4.15216 | 2.53243 |
| morex | ROO2 | 10.7626 | 8.31448 | 10.9893 |
| morex | NOD | 8.01232 | 4.34214 | 7.29214 |
| morex | RAC | 11.4093 | 7.72095 | 11.1635 |
| morex | INF1 | 9.53329 | 12.5842 | 8.85275 |
| morex | INF2 | 8.58525 | 8.2128 | 7.05155 |
| morex | CAR5 | 2.9777 | 6.13005 | 7.07482 |
| morex | CAR15 | 0.721371 | 1.64801 | 0.328577 |
| morex | LEM | 4.87784 | 6.74955 | 6.83743 |
| morex | LOD | 12.3686 | 14.2232 | 12.5174 |
| morex | PAL | 6.39769 | 6.50283 | 7.33758 |
| morex | SEN | 5.54839 | 5.19049 | 5.58627 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +3 | 0.0 | 846 | 478/607 (79%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT5G45030 @ ARAPORT AT5G45030.2 @ TAIR |
+3 | 0.0 | 591 | 347/599 (58%) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607 |
| BRACH PP3 | Bradi4g00270.1.p | +3 | 0.0 | 897 | 500/608 (82%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2352 bp)
>BART1_0-u32165.010 2352 150831_barley_pseudomolecules GCGGAAGTGCCACACACATCCATCCATCCCCGGTCAGATCCACCTCCGCCGCCGGCCTCC CAGCTCGCGCGACCTCAAGATCCGGCGCCGTCGCCCCTGCCCCTGCAAGCAGCGCAGCCC CTCTGACCACCTCGGTAATGGCGCCGTCGCCCCTGCCCCTGCCCCTGCCCCTGCAAGCAG CGCAGCCCCTCTGACCACCTCTCCCCGCACCGTCTCCGTCGCCGCTGCCTCCTCCACGCC CGAGCAGCAGGTTCAGGTTCATGTTCATGTTGAGGACCTACAAAGCTCAAAGGACCCAGA TGGTACTGGCATAAATAATGCAGCAGCCTTCACGCATTTGGAAGGCGCATGCCGAGGACG GGTCGGGGCTGGACATGGAGAGGAACGGATGCAACGGCCACAATAACGTTAACCGCTGCC CGTCCCCTCTCCAGCCCGTCGCCTCAGCTGGCCAGCACTCCGAAAGCGCCGCCGCCTACT TCTCTTGGCCCACGTCTACGCTGATGCACGGCTCCGCCGAAGGCCGCGCCAACTACTTTG GGAACCTGCAGAAGGGCGTGCTCCCGGGCCACCTTGCCCGCCTGCCCAAAGGCCAGCAGG CCACCACCTTGCTCGATCTCATGATTATAAGGGCGTTCCACAGCAAGATCCTGCGCCGCT TCAGCCTTGGCACCGCCATAGGCTTCCGGATCAGGAAGGGGACGTTGACCGACACGCCCG CCATCCTCGTCTTTGTTGCTCGCAAGGTTAACAAGAAGTGGCTCAGGCCTACGCAGTGCC TTCCGGCCGCCCTCGAGGTAGCTAGCCTTGAAACATATGGGACTTTGGGTGCCATCGTGA AGAGTCGAACTGGCAACAAGCAAGTAGGCTTCCTAACGAACAGACATGTTGCAGTTGACC TGGATTATCCTAATCAAAAGATGTTCCATCCGTTGCCCCCTAATCTTGGACCTGGAGTTT ACCTAGGTGCCGTTGAGAGAGCCACGTCTTTTATCACGGATGATGTTTGGTATGGTATAT ATGCGGGAACAAACCCAGAAACATTTGTCCGGGCTGATGGTGCATTTATACCATTTGCGG ACGACTTTGACATTACTAATGTCAGCACTTCAGTTAAAGGAGTCGGACTCATTGGTGATA TCAAGGCAATCGATCTGCAGTCCCCGATTGGCAGTCTCATCGGGAAGCAAGTTGTGAAAG TTGGAAGAAGCTCAGGCCATACGACAGGGACCGTCATGGCATATGCTCTTGAATACAACG ATGAGAAGGGCATATGCTTTTTTACCGACTTCCTCGTCGTCGGGGAGAACCAGCAAACGT TTGATCTTGAAGGGGACAGCGGAAGCCTTATAATCTTGACAGGACAAGATGGTGAGAAGC CACAGCCTATAGGGATTATATGGGGTGGCACGGCCAACCGTGGAAGGTTGAAGCTCAAAA GTGGGCAGGGCCCGGAGAACTGGACGAGTGGTGTTGATCTGGGGCGCCTCCTTGACCTCC TCGAGCTCGATCTGATCACGACAAGCGAAGGGCTGCAAGAGGCCCTGGAGGAGCAGAGGA TCACCCTAGCAGCCGCCGTGGCAGCGGCCAATTCTACGGCCACCGAGTCGTCGCCCGTGG CCGCCACACCGCAAGAAGCCGAGAAAGTGGACAAGATCTACGAGCCCCTGGGGATCAACA TCCAGCAGCTCCCCCGGGACGGCCCCGCCAACTCGACGGAGCAGCCCTTCGGGCCCGGCG AGTTCCACGTCGACACGGTGGAAGGGATAAATAGCAGCAACGTGGAGGAGCGGCAGTTCA TCCCGAACCTGATGGGCATGTCCTCGATGCGCGACGAGCAAGGAGGCAACGGCGAGCTGG AAAACAACAACAGCTGCAACCTGGAGAGCCCGGCGGAGGACAACATCTGCTTCTCGCTGC ACCTGGGCGAGCGGGAGCCTAAGAGGCTCCGGTCCGACACGACGACGGTGGACATAGACC TGCAGAAATGACGGTTCCTTTCGTCGCCCCCCTCTGTATGCTGCGGGGTCGCCGTTGTTG TTGTTATCATTGGAGGCGATTGCGATTTGTGCATTGTATGCATTGGGATGGCAGAATAAA ACCCCATTGATCGATCTGTGAGATGAGGACCTCTTGTTGTATTGCTCGCTGGGACCCACA GAGTTTTACTACGTGTACTAGTTTCAGGTGAAAATGATTGTGCTGTCAGCTGTATGTGAT TTGATTTAACTCCCAACTCCTCAGCCAACTAACCAGCATGTGAATGTGAATAATGGAAGG AAAATGCTACGGCCTACGGCCTGTGTGATGTGTATCTACCAACTGTCGAGTACTCCTAAA GGAGGAGTTGAT
Protein Sequence (557 aa)
>BART1_0-u32165.010 557 150831_barley_pseudomolecules MQQPSRIWKAHAEDGSGLDMERNGCNGHNNVNRCPSPLQPVASAGQHSESAAAYFSWPTS TLMHGSAEGRANYFGNLQKGVLPGHLARLPKGQQATTLLDLMIIRAFHSKILRRFSLGTA IGFRIRKGTLTDTPAILVFVARKVNKKWLRPTQCLPAALEVASLETYGTLGAIVKSRTGN KQVGFLTNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNP ETFVRADGAFIPFADDFDITNVSTSVKGVGLIGDIKAIDLQSPIGSLIGKQVVKVGRSSG HTTGTVMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGQDGEKPQPIGI IWGGTANRGRLKLKSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQEALEEQRITLAAA VAAANSTATESSPVAATPQEAEKVDKIYEPLGINIQQLPRDGPANSTEQPFGPGEFHVDT VEGINSSNVEERQFIPNLMGMSSMRDEQGGNGELENNNSCNLESPAEDNICFSLHLGERE PKRLRSDTTTVDIDLQK