Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU5Hr1G000150	41.6	+	+	4416	-6199	Containing
HORVU5Hr1G000170	44.0	+	+	4669	-5946	Containing

Transcripts from Gene BART1_0-u32165

Transcript	Length(bp)	Description
BART1_0-u32165.001	6007	6007 bp MSTRG.32165.1 MSTRG.32165
BART1_0-u32165.002	2557	2557 bp MSTRG.32165.2 MSTRG.32165
BART1_0-u32165.003	5880	5880 bp MSTRG.32165.3 MSTRG.32165
BART1_0-u32165.004	2524	2524 bp MSTRG.32165.4 MSTRG.32165
BART1_0-u32165.005	1800	1800 bp MSTRG.32165.5 MSTRG.32165
BART1_0-u32165.006	2242	2242 bp MSTRG.32165.6 MSTRG.32165
BART1_0-u32165.007	2139	2139 bp MSTRG.32165.7 MSTRG.32165
BART1_0-u32165.008	2784	2784 bp MSTRG.32165.8 MSTRG.32165
BART1_0-u32165.009	1901	1901 bp MSTRG.32165.9 MSTRG.32165
BART1_0-u32165.010	2352	2352 bp MSTRG.32165.10 MSTRG.32165

Exon Structure of BART1_0-u32165

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g31470.2	+2	0.0	967	526/607 (87%)	protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed
TAIR PP10	AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR	+2	0.0	689	377/588 (64%)	Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579
BRACH PP3	Bradi4g00270.1.p	+2	0.0	1018	548/608 (90%)	pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0007010	cytoskeleton organization
GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors
GO:0008168	methyltransferase activity
GO:0006265	DNA topological change
GO:0005694	chromosome
GO:0005654	nucleoplasm
GO:0005874	microtubule
GO:0009832	plant-type cell wall biogenesis
GO:0005525	GTP binding
GO:0005524	ATP binding
GO:1990204	oxidoreductase complex
GO:0003924	GTPase activity
GO:0019464	glycine decarboxylation via glycine cleavage system
GO:0030981	cortical microtubule cytoskeleton
GO:0016310	phosphorylation
GO:0071555	cell wall organization
GO:0140096	catalytic activity, acting on a protein
GO:0010051	xylem and phloem pattern formation
GO:0061505	DNA topoisomerase II activity
GO:0008233	peptidase activity
GO:0080006	internode patterning
GO:0008017	microtubule binding
GO:0009524	phragmoplast
GO:0003677	DNA binding
GO:0005737	cytoplasm
GO:0006508	proteolysis
GO:0006629	lipid metabolic process
GO:0016021	integral component of membrane
GO:0005819	spindle
GO:2000024	regulation of leaf development
GO:0017111	nucleoside-triphosphatase activity
GO:0010305	leaf vascular tissue pattern formation
GO:0055114	oxidation-reduction process
GO:0010222	stem vascular tissue pattern formation
GO:0016740	transferase activity
GO:0016301	kinase activity
GO:0016787	hydrolase activity
GO:0032259	methylation

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons