- Transcript BART1_0-u32165.008
- Transcript IDBART1_0-u32165.008
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 549098 | 548595 | + |
| chr5H | 2 | 549972 | 549426 | + |
| chr5H | 3 | 550199 | 550056 | + |
| chr5H | 4 | 551456 | 551216 | + |
| chr5H | 5 | 552197 | 551697 | + |
| chr5H | 6 | 553163 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 8.29962 | 6.23783 | 4.76023 |
| morex | ETI | 9.82803 | 9.1609 | 9.88784 |
| morex | LEA | 4.27438 | 4.10772 | 5.27281 |
| morex | EPI | 5.69838 | 6.86706 | 6.22426 |
| morex | ROO | 6.77727 | 7.46525 | 2.24735 |
| morex | ROO2 | 15.1695 | 15.8876 | 14.0813 |
| morex | NOD | 4.85769 | 11.2111 | 13.5399 |
| morex | RAC | 13.3052 | 17.0146 | 13.3069 |
| morex | INF1 | 8.14645 | 10.4827 | 10.3583 |
| morex | INF2 | 8.41805 | 11.8557 | 5.26538 |
| morex | CAR5 | 10.4805 | 9.15279 | 8.68084 |
| morex | CAR15 | 0.580426 | 0.277204 | 0.227027 |
| morex | LEM | 13.6149 | 8.50953 | 8.73239 |
| morex | LOD | 18.4632 | 18.5107 | 17.3842 |
| morex | PAL | 10.5617 | 10.9049 | 13.002 |
| morex | SEN | 8.63465 | 9.7705 | 8.18611 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +2 | 0.0 | 967 | 526/607 (87%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR |
+2 | 0.0 | 689 | 377/588 (64%) | Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579 |
| BRACH PP3 | Bradi4g00270.1.p | +2 | 0.0 | 1018 | 548/608 (90%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2784 bp)
>BART1_0-u32165.008 2784 150831_barley_pseudomolecules CTAGCATCAACACCAGAAGAGGAAGACAATGAATGAATGATGAAGTTTCTTCATTCAGCC ATATGGCTCTTAATAATGTGTACTGTAATTTAATATTAGTAAGGATGGATCCTAATTTAT TTTGTAGCTAGGAGCGAAACTGTTAAGATGGTGTAGGCCAGTGAAAAGTGGTGAGGTTGC AATCAAACAAGGTGTTGTGTGTATGCCTAATCCAATATAAAGAAGCCCTAAAAAAGCTCC GAATTTGGCAGGAAATTACAGCGGAAGTGCCACACACATCCATCCATCCCCGGTCAGATC CACCTCCGCCGCCGGCCTCCCAGCTCGCGCGACCTCAAGATCCGGCGCCGTCGCCCCTGC CCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCGGTAATGGCGCCGTCGCCCCTGCCCCT GCCCCTGCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCTCCCCGCACCGTCTCCGTC GCCGCTGCCTCCTCCACGCCCGAGGTTCAGGTTCATGTTCATGTTGAGGACCTACAAAGC TCAAAGGACCCAGATGGTACTGGCATAAATAATGCAGCAGCCTTCACGCATTTGGAAGGC GCATGCCGAGGACGGGTCGGGGCTGGACATGGAGAGGAACGGATGCAACGGCCACAATAA CGTTAACCGCTGCCCGTCCCCTCTCCAGCCCGTCGCCTCAGCTGGCCAGCACTCCGAAAG CGCCGCCGCCTACTTCTCTTGGCCCACGTCTACGCTGATGCACGGCTCCGCCGAAGGCCG CGCCAACTACTTTGGGAACCTGCAGAAGGGCGTGCTCCCGGGCCACCTTGCCCGCCTGCC CAAAGGCCAGCAGGCCACCACCTTGCTCGATCTCATGATTATAAGGGCGTTCCACAGCAA GATCCTGCGCCGCTTCAGCCTTGGCACCGCCATAGGCTTCCGGATCAGGAAGGGGACGTT GACCGACACGCCCGCCATCCTCGTCTTTGTTGCTCGCAAGGTTAACAAGAAGTGGCTCAG GCCTACGCAGTGCCTTCCGGCCGCCCTCGAGGGGCCTGGGGGTGTGTGGTGTGATGTCGA TGTTGTTGAATTCTCGTATTATGGTGCACCCGCACCCACTCCAAAGGAACAACTGTACGA CGAGCTTGTTGATGGGCTGCGTGGCAGCGATCCATCTATAGGCTCTGGTTCACAGGTAGC TAGCCTTGAAACATATGGGACTTTGGGTGCCATCGTGAAGAGTCGAACTGGCAACAAGCA AGTAGGCTTCCTAACGAACAGACATGTTGCAGTTGACCTGGATTATCCTAATCAAAAGAT GTTCCATCCGTTGCCCCCTAATCTTGGACCTGGAGTTTACCTAGGTGCCGTTGAGAGAGC CACGTCTTTTATCACGGATGATGTTTGGTATGGTATATATGCGGGAACAAACCCAGAAAC ATTTGTCCGGGCTGATGGTGCATTTATACCATTTGCGGACGACTTTGACATTACTAATGT CAGCACTTCAGTTAAAGGAGTCGGACTCATTGGTGATATCAAGGCAATCGATCTGCAGTC CCCGATTGGCAGTCTCATCGGGAAGCAAGTTGTGAAAGTTGGAAGAAGCTCAGGCCATAC GACAGGGACCGTCATGGCATATGCTCTTGAATACAACGATGAGAAGGGCATATGCTTTTT TACCGACTTCCTCGTCGTCGGGGAGAACCAGCAAACGTTTGATCTTGAAGGGGACAGCGG AAGCCTTATAATCTTGACAGGACAAGATGGTGAGAAGCCACAGCCTATAGGGATTATATG GGGTGGCACGGCCAACCGTGGAAGGTTGAAGCTCAAAAGTGGGCAGGGCCCGGAGAACTG GACGAGTGGTGTTGATCTGGGGCGCCTCCTTGACCTCCTCGAGCTCGATCTGATCACGAC AAGCGAAGGGCTGCAAGAGGCCCTGGAGGAGCAGAGGATCACCCTAGCAGCCGCCGTGGC AGCGGCCAATTCTACGGCCACCGAGTCGTCGCCCGTGGCCGCCACACCGCAAGAAGCCGA GAAAGTGGACAAGATCTACGAGCCCCTGGGGATCAACATCCAGCAGCTCCCCCGGGACGG CCCCGCCAACTCGACGGAGCAGCCCTTCGGGCCCGGCGAGTTCCACGTCGACACGGTGGA AGGGATAAATAGCAGCAACGTGGAGGAGCGGCAGTTCATCCCGAACCTGATGGGCATGTC CTCGATGCGCGACGAGCAAGGAGGCAACGGCGAGCTGGAAAACAACAACAGCTGCAACCT GGAGAGCCCGGCGGAGGACAACATCTGCTTCTCGCTGCACCTGGGCGAGCGGGAGCCTAA GAGGCTCCGGTCCGACACGACGACGGTGGACATAGACCTGCAGAAATGACGGTTCCTTTC GTCGCCCCCCTCTGTATGCTGCGGGGTCGCCGTTGTTGTTGTTATCATTGGAGGCGATTG CGATTTGTGCATTGTATGCATTGGGATGGCAGAATAAAACCCCATTGATCGATCTGTGAG ATGAGGACCTCTTGTTGTATTGCTCGCTGGGACCCACAGAGTTTTACTACGTGTACTAGT TTCAGGTGAAAATGATTGTGCTGTCAGCTGTATGTGATTTGATTTAACTCCCAACTCCTC AGCCAACTAACCAGCATGTGAATGTGAATAATGGAAGGAAAATGCTACGGCCTACGGCCT GTGTGATGTGTATCTACCAACTGTCGAGTACTCCTAAAGGAGGAGTTGATAGCTTTCGTT TCAAATTTTTTTCGTCTTCCCTTT
Protein Sequence (605 aa)
>BART1_0-u32165.008 605 150831_barley_pseudomolecules MQQPSRIWKAHAEDGSGLDMERNGCNGHNNVNRCPSPLQPVASAGQHSESAAAYFSWPTS TLMHGSAEGRANYFGNLQKGVLPGHLARLPKGQQATTLLDLMIIRAFHSKILRRFSLGTA IGFRIRKGTLTDTPAILVFVARKVNKKWLRPTQCLPAALEGPGGVWCDVDVVEFSYYGAP APTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVA VDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIP FADDFDITNVSTSVKGVGLIGDIKAIDLQSPIGSLIGKQVVKVGRSSGHTTGTVMAYALE YNDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGQDGEKPQPIGIIWGGTANRGRLK LKSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQEALEEQRITLAAAVAAANSTATESS PVAATPQEAEKVDKIYEPLGINIQQLPRDGPANSTEQPFGPGEFHVDTVEGINSSNVEER QFIPNLMGMSSMRDEQGGNGELENNNSCNLESPAEDNICFSLHLGEREPKRLRSDTTTVD IDLQK