- Transcript BART1_0-u32165.007
- Transcript IDBART1_0-u32165.007
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 544004 | 543750 | + |
| chr5H | 2 | 544288 | 544118 | + |
| chr5H | 3 | 544850 | 544680 | + |
| chr5H | 4 | 545100 | 544949 | + |
| chr5H | 5 | 545338 | 545192 | + |
| chr5H | 6 | 545574 | 545503 | + |
| chr5H | 7 | 546156 | 545683 | + |
| chr5H | 8 | 546441 | 546260 | + |
| chr5H | 9 | 547088 | 546574 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 25.9662 | 18.9404 | 19.1945 |
| morex | ETI | 5.64746 | 5.56636 | 5.89023 |
| morex | LEA | 10.9422 | 4.68383 | 4.59725 |
| morex | EPI | 1.67776 | 6.28064 | 4.1343 |
| morex | ROO | 3.37773 | 9.44048 | 4.14472 |
| morex | ROO2 | 13.6582 | 16.4138 | 12.922 |
| morex | NOD | 34.906 | 35.2392 | 19.5707 |
| morex | RAC | 29.1894 | 35.9664 | 32.12 |
| morex | INF1 | 20.0209 | 28.2207 | 25.6342 |
| morex | INF2 | 26.2725 | 37.5794 | 35.3569 |
| morex | CAR5 | 27.7067 | 30.4586 | 28.1259 |
| morex | CAR15 | 5.28564 | 5.23771 | 6.45562 |
| morex | LEM | 5.81107 | 5.75196 | 8.70776 |
| morex | LOD | 31.6232 | 29.0403 | 32.1807 |
| morex | PAL | 12.7405 | 13.2093 | 13.2241 |
| morex | SEN | 2.35165 | 4.49023 | 3.06471 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g44340.1 | +3 | 0.0 | 523 | 319/348 (92%) | protein|ATMAP70 protein, putative, expressed |
| TAIR PP10 | AT1G68060 @ ARAPORT AT1G68060.1 @ TAIR |
+3 | 9e-153 | 373 | 239/350 (68%) | Symbols: ATMAP70-1, MAP70-1 | microtubule-associated proteins 70-1 | chr1:25511392-25514226 REVERSE LENGTH=622 |
| BRACH PP3 | Bradi4g00250.1.p | +3 | 0.0 | 547 | 333/350 (95%) | pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2139 bp)
>BART1_0-u32165.007 2139 150831_barley_pseudomolecules TCGGAATTTCAGACCTCTGGTCTGGTGTAATGTAATGCTAGGAGAATTGTTTGTTTGCAA CTAGATAGATAGAAGAAACTAATCAAGGATTCGCCTCTGTTGCCATTACAAATTCGAATG CCTAACTTTTCCGCGCATTTTTTCAAATCTTGGGGACAATCCTGACTTTGCCTTACGCAT CAATGTAAGCTTACCGAAGAACTGGCAAAGGTGGATGGGAAGCTCAAGCTCACCGAGTCT CTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGATCAACGACGAGAAGAAAGCAGCGCTT GCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAAGGGTTCATGCCGCGCAGAAGGACGAT GACATGCCTCCCATCGAGGCCATCCTCGCGCCGCTGGAGGCCGAGCTGAAACTAGCCCGT CAAGAGATTGCAAAATTACAAGATGACAACAGGGCATTAGACCGTCTTACAAAGTCTAAG GAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTCAGATAGCACTAGCAAAAGCTTCCTTG GTGGATGATCTGCAAAATAAAAACCAAGAATTGATGAAACAGATCGAGATATGTCAGAGA ACAAAATCTTGGACAGAATGCACCGCCAGAAGGTTGCTGAGGTTGAAAAGCTTACTCAGA CCGTCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGCGGTGCAGCCGCAAATGCTGTGAGGG ACTATCAGCGGAAAGTTCAGGAGATGAATGAGGAAATGAAAACTCTGGATCGTGAGCTTG CTCGTGCAAAGGTTTCAGCAAATAGGGTCGCGGTAGTGGTGGCAAATGAGTGGAAAGATG GCAATGATAAAGTAATGCCTGTTAAGCAATGGCTTGAAGAACGGAGGCTTCTGCAAGGAG AAATGCAGCAACTCCGTGATAAACTTGCTATAGCAGAAAGGGCTGCAAGATCAGAAGCTC AACTGAAGGACAAGTTCCAGCTACGGCTTAAAGTGCTTGAGGAAGGATTGAGAATGTCGA CATCTCGAACCAATGCAAGTGCCGCCCGCCGCCAGTCTATTGGTGGCGCTGAGAGTGCAT CCAAGACCAATGGCTTTCTATCGAAGCGGCCATCATTCCAGATGAGAACATCGGTATCTA CCACCACGACTACGCTTGTGAACCATGCGAAGGGGGCATCCAAGTCTTTTGATGGAGGGT GTAGATCACTTGACCGTTATAAGGGCCATGTAAATGGGGTTGGCATGAACGTATCAACCG ACTCCAGCGAGGATAAGGAGTCAAACAACTCAGATGAGAAGCCTAGTGAATTTACATCTG TTGAGTCGGAGGACACGGTGTCAGGTATGCTGTATGATATGCTGCAAAAGGAGGTTGTTG CTCTAAGGAAGGCTTGTCATGAAAAGGACCAAAGCTTGAAAGACAAGGACGACGCAGTCG AGATGTTGGCCAAGAAAGTCGACACTTTAACAAAGGCGATGGAGTCAGAGGCTAAGAAGA TGAGACGGGATGTAGCTGCCATGGAGAAGGAGGTGGTGGCTATGCGATTAGAGAAAGAGC AGGATACGAAAGCAAGAAGGTTCGGCAGTTCAAGCGCCTCTGCCTCACAGGTGCCACCTG GAAGGACTCTGCCTCGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNGTTCAGCACGCAACATGTGATGCTGCTGATATGAAGCATTAAAAAGACCTT GGAGCACCTCCTGTGTAGTTAGTTGAATGATGGCATCCAGGGACCCTCTGCTGACTTGTG TGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCCCAGAAGTGTCGAGCCTGAGCCTGA GCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGCGGAAATCAATCAATCAGCGACTCG GGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGCGGTGTTTTTATTCATTTCCTGTCG TGGAACCGAAAACACTTTGTTGTATAGGTATGGTGTGGCCTTGCAATATTTTTTGTTTGT AATCCTACCTACTCCCCAAGAGCTTGTGTGGTGTTTTATGCTAGCCAAGTTGTTTGTGAA TAATAACATGATGATGATGATGATGATAGTGCAGTTAAG
Protein Sequence (372 aa)
>BART1_0-u32165.007 372 150831_barley_pseudomolecules MSENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEEMKTLD RELARAKVSANRVAVVVANEWKDGNDKVMPVKQWLEERRLLQGEMQQLRDKLAIAERAAR SEAQLKDKFQLRLKVLEEGLRMSTSRTNASAARRQSIGGAESASKTNGFLSKRPSFQMRT SVSTTTTTLVNHAKGASKSFDGGCRSLDRYKGHVNGVGMNVSTDSSEDKESNNSDEKPSE FTSVESEDTVSGMLYDMLQKEVVALRKACHEKDQSLKDKDDAVEMLAKKVDTLTKAMESE AKKMRRDVAAMEKEVVAMRLEKEQDTKARRFGSSSASASQVPPGRTLPRSXXXXXXXXXX XXXXXXXSARNM