- Transcript BART1_0-u32165.006
- Transcript IDBART1_0-u32165.006
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 543353 | 543264 | + |
| chr5H | 2 | 544004 | 543939 | + |
| chr5H | 3 | 544288 | 544118 | + |
| chr5H | 4 | 544850 | 544680 | + |
| chr5H | 5 | 545100 | 544945 | + |
| chr5H | 6 | 545338 | 545192 | + |
| chr5H | 7 | 545574 | 545487 | + |
| chr5H | 8 | 546156 | 545683 | + |
| chr5H | 9 | 546441 | 546260 | + |
| chr5H | 10 | 547270 | 546574 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 14.5047 | 16.0745 | 16.7876 |
| morex | ETI | 6.46553 | 6.57919 | 8.62821 |
| morex | LEA | 14.6733 | 2.82133 | 6.32972 |
| morex | EPI | 1.37501 | 3.4435 | 2.67946 |
| morex | ROO | 5.43103 | 9.29248 | 1.38605 |
| morex | ROO2 | 20.5296 | 17.9365 | 16.3222 |
| morex | NOD | 21.3853 | 28.7589 | 22.4679 |
| morex | RAC | 45.2232 | 43.16 | 42.9038 |
| morex | INF1 | 22.1675 | 22.546 | 15.3522 |
| morex | INF2 | 23.2432 | 22.9484 | 20.7439 |
| morex | CAR5 | 15.3701 | 15.0481 | 19.9229 |
| morex | CAR15 | 2.38906 | 2.14195 | 4.32583 |
| morex | LEM | 12.1357 | 5.64934 | 9.25187 |
| morex | LOD | 36.0005 | 30.8353 | 40.8953 |
| morex | PAL | 24.9577 | 21.8038 | 22.4536 |
| morex | SEN | 1.80874 | 4.3763 | 4.80463 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g44340.1 | +2 | 0.0 | 400 | 223/251 (89%) | protein|ATMAP70 protein, putative, expressed |
| TAIR PP10 | AT1G24764 @ ARAPORT AT1G24764.1 @ TAIR |
+1 | 2e-166 | 351 | 239/266 (90%) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634 |
| BRACH PP3 | Bradi4g00250.1.p | +2 | 0.0 | 422 | 236/253 (93%) | pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2242 bp)
>BART1_0-u32165.006 2242 150831_barley_pseudomolecules CCAGATAAGGAGAAGGAGCTGGGCGACGCGCAGGCGGAGATCAAGGCCCTGCGCCTCTCC GAGCGGGCCCGCGAGAAGGCCGTCGAGGATCTTACCGAAGAACTGGCAAAGGTGGATGGG AAGCTCAAGCTCACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGATCAAC GACGAGAAGAAAGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAAGGGTT CATGCCGCGCAGAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCGCCGCTGGAG GCCGAGCTGAAACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAACAGGGCATTA GACCGTCTTACAAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTCAGATA GCACTAGCAAAAGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAATTGATGAAA CAGATCGAGATATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGCCAGAAGGTT GCTGAGGTTGAAAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGC GGTGCAGCCGCAAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATGAATGAGGAA ATGAAAACTCTGGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGGGTCGCGGTA GTGGTGGCAAATGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAGCAATGGCTT GAAGAACGGAGGCTTCTGCAAGATTATCCTTTTACAGGGAGAAATGCAGCAACTCCGTGA TAAACTTGCTATAGCAGAAAGGGCTGCAAGATCAGAAGCTCAACTGAAGGACAAGTTCCA GCTACGGCTTAAAGTGCTTGAGGAAGGATTGAGAATGTCGACATCTCGAACCAATGCAAG TGCCGCCCGCCGCCAGTCTATTGGTGGCGCTGAGAGTGCATCCAAGACCAATGGCTTTCT ATCGAAGCGGCCATCATTCCAGATGAGAACATCGGTATCTACCACCACGACTACGCTTGT GAACCATGCGAAGGGGGCATCCAAGTCTTTTGATGGAGGGTGTAGATCACTTGACCGTTA TAAGGGCCATGTAAATGGGGTTGGCATGAACGTATCAACCGACTCCAGCGAGGATAAGGA GTCAAACAACTCAGATGAGAAGCCTAGTGAATTTACATCTGTTGAGTCGGAGGACACGGT GTCAGGTATGCTGTATGATATGCTGCAAAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCA TGAAAAGGACCAAAGCTTGAAAGACAAGGACGACGCAGTCGAGATGTTGGCCAAGAAAGT CGACACTTTAACAAAGGCGATGGAGTCAGAGGCTAAGAAGATGAGACGGGATGTAGCTGC CATGGAGAAGGAGGTGGTGGCTATGCGATTAGAGAAAGAGCAGGATACGAAAGCAAGAAG GTTCGGCAGTTCAAGCGCCTCTGCCTCACAGGTGCCACCTGGAAGGACTCTGCCTCGGAG CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGCACG CAACATGTGATGCTGCTGATATGAAGCATTAAAAAGACCTTGGAGCACCTCCTGTGTAGT TAGTTGAATGATGGCATCCAGGGACCCTCTGCTGACTTGTGTGTAGAAAAAACAAGAAGG CATTGCATCTTGGTGCCCAGAAGTGTCGAGCCTGAGCCTGAGCCTGATCGATCGTGCCTG CTACATCTCGTGGTCGCGGAAATCAATCAATCAGCGACTCGGGTCGAGTGAAGTTAGTGT CGTTGATGAGATTTGGCGGTGTTTTTATTCATTTCCTGTCGTGGAACCGAAAACACTTTG TTGTATAGGTATGGTGTGGCCTTGCAATATTTTTTGTTTGTAATCCTACCTACTCCCCAA GAGCTTGTGTGGTGTTTTATGCTAGCCAAGTTGTTTGTGAATAATAACATGATGATGATG ATGATGATAGTGCAGTTAAGCTGGTGTGTCTTTCTCTGGAAGGTGAATTCCAATCTGTCT AGTGTAAAACTGCAGTCTCTGCAACGCACGGACATATTTCCTAGTGAAATATAAGAGCTT TTAGATCACTACTTTATAGAGGGAGTATCATTCAGTTTTTTTGGGACATCTGACAACCAC TATATGCTAACAAAATAAGCAG
Protein Sequence (279 aa)
>BART1_0-u32165.006 279 150831_barley_pseudomolecules PDKEKELGDAQAEIKALRLSERAREKAVEDLTEELAKVDGKLKLTESLLESKNLEAKKIN DEKKAALAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRAL DRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQELMKQIEICQEENKILDRMHRQKV AEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKVQEMNEEMKTLDRELARAKVSANRVAV VVANEWKDGNDKVMPVKQWLEERRLLQDYPFTGRNAATP