- Transcript BART1_0-u32165.005
- Transcript IDBART1_0-u32165.005
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 543119 | 542781 | + |
| chr5H | 2 | 544004 | 543939 | + |
| chr5H | 3 | 544288 | 544118 | + |
| chr5H | 4 | 544850 | 544680 | + |
| chr5H | 5 | 545100 | 544945 | + |
| chr5H | 6 | 545338 | 545192 | + |
| chr5H | 7 | 545574 | 545503 | + |
| chr5H | 8 | 546156 | 545683 | + |
| chr5H | 9 | 546463 | 546260 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0000240777 | 34.4639 | 29.6443 |
| morex | ETI | 2.60287 | 2.54869 | 3.55176 |
| morex | LEA | 19.0495 | 6.30015 | 4.56584 |
| morex | EPI | 0.222504 | 0.227611 | 0.573342 |
| morex | ROO | 3.53733 | 11.0065 | 3.91373 |
| morex | ROO2 | 14.0693 | 7.94976 | 9.9422 |
| morex | NOD | 20.4558 | 12.2505 | 4.87033 |
| morex | RAC | 23.4169 | 15.9819 | 26.8931 |
| morex | INF1 | 31.4398 | 31.7728 | 34.3094 |
| morex | INF2 | 66.3298 | 63.8214 | 43.6688 |
| morex | CAR5 | 51.4543 | 51.7556 | 43.5628 |
| morex | CAR15 | 8.69505 | 8.15664 | 10.4595 |
| morex | LEM | 3.21553 | 1.7778 | 6.09107 |
| morex | LOD | 23.6432 | 13.791 | 30.5652 |
| morex | PAL | 8.28226 | 8.03611 | 9.65051 |
| morex | SEN | 0.929905 | 0.86228 | 1.60036 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g44340.1 | +1 | 0.0 | 711 | 447/478 (94%) | protein|ATMAP70 protein, putative, expressed |
| TAIR PP10 | AT1G68060 @ ARAPORT AT1G68060.1 @ TAIR |
+1 | 0.0 | 555 | 360/485 (74%) | Symbols: ATMAP70-1, MAP70-1 | microtubule-associated proteins 70-1 | chr1:25511392-25514226 REVERSE LENGTH=622 |
| BRACH PP3 | Bradi4g00250.1.p | +1 | 0.0 | 733 | 460/480 (96%) | pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1800 bp)
>BART1_0-u32165.005 1800 150831_barley_pseudomolecules AATGAAATGACCATCCTCTCCTCTCCTCTCCTCTCCCACACACACACACTGTCATTCATG TGACCTGACCGCCATTAACACACTCTCTCCGACCGCCCCCCACAAGCACAGCGCAGGCGC AGGCGCATTGGCCGGCGTGCTTGCGATCGGGATTGCCGGCGGCGGGGGCCATGGCCGATC CGTACGGCGACGGCCGGGCGCTGAGGAACCATCAGCAGGCGCCGGCACAGCAGCGGCCGA GGCTGAAGCCGGCGCTGGAGATGGAGGACCTCATCAGCCTGCTCCACGGCTCCGATCCCG TCCGCGTCGAGCTCACCCGCCTCGAGAACGACCTCCACTCTTACCGAAGAACTGGCAAAG GTGGATGGGAAGCTCAAGCTCACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAG AAGATCAACGACGAGAAGAAAGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTG CGAAGGGTTCATGCCGCGCAGAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCG CCGCTGGAGGCCGAGCTGAAACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAAC AGGGCATTAGACCGTCTTACAAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACC GTTCAGATAGCACTAGCAAAAGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAA TTGATGAAACAGATCGAGATATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGC CAGAAGGTTGCTGAGGTTGAAAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTT CTTGCTGGCGGTGCAGCCGCAAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATG AATGAGGAAATGAAAACTCTGGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGG GTCGCGGTAGTGGTGGCAAATGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAG CAATGGCTTGAAGAACGGAGGCTTCTGCAAGGAGAAATGCAGCAACTCCGTGATAAACTT GCTATAGCAGAAAGGGCTGCAAGATCAGAAGCTCAACTGAAGGACAAGTTCCAGCTACGG CTTAAAGTGCTTGAGGAAGGATTGAGAATGTCGACATCTCGAACCAATGCAAGTGCCGCC CGCCGCCAGTCTATTGGTGGCGCTGAGAGTGCATCCAAGACCAATGGCTTTCTATCGAAG CGGCCATCATTCCAGATGAGAACATCGGTATCTACCACCACGACTACGCTTGTGAACCAT GCGAAGGGGGCATCCAAGTCTTTTGATGGAGGGTGTAGATCACTTGACCGTTATAAGGGC CATGTAAATGGGGTTGGCATGAACGTATCAACCGACTCCAGCGAGGATAAGGAGTCAAAC AACTCAGATGAGAAGCCTAGTGAATTTACATCTGTTGAGTCGGAGGACACGGTGTCAGGT ATGCTGTATGATATGCTGCAAAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCATGAAAAG GACCAAAGCTTGAAAGACAAGGACGACGCAGTCGAGATGTTGGCCAAGAAAGTCGACACT TTAACAAAGGCGATGGAGTCAGAGGCTAAGAAGATGAGACGGGATGTAGCTGCCATGGAG AAGGAGGTGGTGGCTATGCGATTAGAGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGC AGTTCAAGCGCCTCTGCCTCACAGGTGCCACCTGGAAGGTACAGTACACCCCTACCGCAG
Protein Sequence (429 aa)
>BART1_0-u32165.005 429 150831_barley_pseudomolecules MPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLV DDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVR DYQRKVQEMNEEMKTLDRELARAKVSANRVAVVVANEWKDGNDKVMPVKQWLEERRLLQG EMQQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRMSTSRTNASAARRQSIGGAESA SKTNGFLSKRPSFQMRTSVSTTTTTLVNHAKGASKSFDGGCRSLDRYKGHVNGVGMNVST DSSEDKESNNSDEKPSEFTSVESEDTVSGMLYDMLQKEVVALRKACHEKDQSLKDKDDAV EMLAKKVDTLTKAMESEAKKMRRDVAAMEKEVVAMRLEKEQDTKARRFGSSSASASQVPP GRYSTPLPQ