- Transcript BART1_0-u32165.003
- Transcript IDBART1_0-u32165.003
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 543119 | 542767 | + |
| chr5H | 2 | 543353 | 543268 | + |
| chr5H | 3 | 544004 | 543939 | + |
| chr5H | 4 | 544288 | 544118 | + |
| chr5H | 5 | 544850 | 544680 | + |
| chr5H | 6 | 545100 | 544945 | + |
| chr5H | 7 | 545338 | 545192 | + |
| chr5H | 8 | 545574 | 545503 | + |
| chr5H | 9 | 546156 | 545683 | + |
| chr5H | 10 | 546441 | 546260 | + |
| chr5H | 11 | 546956 | 546574 | + |
| chr5H | 12 | 548136 | 547767 | + |
| chr5H | 13 | 549098 | 548224 | + |
| chr5H | 14 | 549972 | 549420 | + |
| chr5H | 15 | 550199 | 550056 | + |
| chr5H | 16 | 551456 | 551216 | + |
| chr5H | 17 | 552197 | 551697 | + |
| chr5H | 18 | 553251 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.494736 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.0000131509 | 0.372313 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.698979 | 0.556984 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0.00124504 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 2.2789 | 0.0000000293193 | 0.87502 |
| morex | INF2 | 0.485497 | 3.55256 | 1.48181 |
| morex | CAR5 | 4.69714 | 2.81544 | 1.15011 |
| morex | CAR15 | 1.80594 | 1.37391 | 1.53387 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +1 | 0.0 | 967 | 526/607 (87%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR |
+1 | 0.0 | 689 | 377/588 (64%) | Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579 |
| BRACH PP3 | Bradi4g00270.1.p | +1 | 0.0 | 1018 | 548/608 (90%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5880 bp)
>BART1_0-u32165.003 5880 150831_barley_pseudomolecules TGGGCCTGCAAATGAATGAAATGACCATCCTCTCCTCTCCTCTCCTCTCCCACACACACA CACTGTCATTCATGTGACCTGACCGCCATTAACACACTCTCTCCGACCGCCCCCCACAAG CACAGCGCAGGCGCAGGCGCATTGGCCGGCGTGCTTGCGATCGGGATTGCCGGCGGCGGG GGCCATGGCCGATCCGTACGGCGACGGCCGGGCGCTGAGGAACCATCAGCAGGCGCCGGC ACAGCAGCGGCCGAGGCTGAAGCCGGCGCTGGAGATGGAGGACCTCATCAGCCTGCTCCA CGGCTCCGATCCCGTCCGCGTCGAGCTCACCCGCCTCGAGAACGACCTCCACTATAAGGA GAAGGAGCTGGGCGACGCGCAGGCGGAGATCAAGGCCCTGCGCCTCTCCGAGCGGGCCCG CGAGAAGGCCGTCGAGGATCTTACCGAAGAACTGGCAAAGGTGGATGGGAAGCTCAAGCT CACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGATCAACGACGAGAAGAA AGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAAGGGTTCATGCCGCGCA GAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCGCCGCTGGAGGCCGAGCTGAA ACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAACAGGGCATTAGACCGTCTTAC AAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTCAGATAGCACTAGCAAA AGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAATTGATGAAACAGATCGAGAT ATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGCCAGAAGGTTGCTGAGGTTGA AAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGCGGTGCAGCCGC AAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATGAATGAGGAAATGAAAACTCT GGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGGGTCGCGGTAGTGGTGGCAAA TGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAGCAATGGCTTGAAGAACGGAG GCTTCTGCAAGGAGAAATGCAGCAACTCCGTGATAAACTTGCTATAGCAGAAAGGGCTGC AAGATCAGAAGCTCAACTGAAGGACAAGTTCCAGCTACGGCTTAAAGTGCTTGAGGAAGG ATTGAGAATGTCGACATCTCGAACCAATGCAAGTGCCGCCCGCCGCCAGTCTATTGGTGG CGCTGAGAGTGCATCCAAGACCAATGGCTTTCTATCGAAGCGGCCATCATTCCAGATGAG AACATCGGTATCTACCACCACGACTACGCTTGTGAACCATGCGAAGGGGGCATCCAAGTC TTTTGATGGAGGGTGTAGATCACTTGACCGTTATAAGGGCCATGTAAATGGGGTTGGCAT GAACGTATCAACCGACTCCAGCGAGGATAAGGAGTCAAACAACTCAGATGAGAAGCCTAG TGAATTTACATCTGTTGAGTCGGAGGACACGGTGTCAGGTATGCTGTATGATATGCTGCA AAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCATGAAAAGGACCAAAGCTTGAAAGACAA GGACGACGCAGTCGAGATGTTGGCCAAGAAAGTCGACACTTTAACAAAGGCGATGGAGTC AGAGGCTAAGAAGATGAGACGGGATGTAGCTGCCATGGAGAAGGAGGTGGTGGCTATGCG ATTAGAGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGCAGTTCAAGCGCCTCTGCCTC ACAGGTGCCACCTGGAAGGACTCTGCCTCGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGTTCAGCACGCAACATGTGATGCTGCTGATATGAAGC ATTAAAAAGACCTTGGAGCACCTCCTGTGTAGTTAGTTGAATGATGGCATCCAGGGACCC TCTGCTGACTTGTGTGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCCCAGAAGTGTC GAGCCTGAGCCTGAGCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGCGGAAATCAAT CAATCAGCGACTCGGGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGCGGTGTTTTTA TTCATTTCCTGTCGTGGAACCGAAAACACTTTGTTGTATAGGAGCAGAAGAGAATCGCCA TTCTGAACTACATATATAACTGCGATGACACAAAGGCTATGTGGATTCTTAGAATGAAAA GAGGACCATTTGCCAGATTTGTCCACACCTTGAGGAGCTCGGGGGCTGCTAGATGATAGC ATCCACATCAGTGTGGAAGTGCAAGTGGCCATGTACCTTCATGTTGTTTGCCATAACGAG AGGTTCATGGTTATCCACAACATGTTCAGGAGATCAATGGAGATCATCTCAAGGTACTTC AAGCAAGTGCTCTATGTTGTTGGGGAGGTCAGAGGAGAGATGATAAAGTCACCAATCGAC CGGACTCCTACCAAGATGCACACTAGCCTAAGATGGTATCCGTACTTCAAGGATTGCACT GGGGCAATAGATGGTACTCATATCATTGCCATAGCGTCGAGGTCACAATCTGCAACATAC AAGGGGAGGAAGCACTACATAGCTTGTTCTTGCATATTGCATTATGCATAATCAAGGTCC TGCAATGTGGTTGTGATGAACCGGTGCTTCACGAGGAAGATATGACACCCAATGACGTTG ACCTCGGTGGCTATGGTGTGGGGGCATTTGACAATGAAGCCTGAAAGATCGAAATGATGG AGTGAACACATGCAATGTGGAATAACACAGGTCAAACAAGAATCTGAAGTAGTAGAAGAA GAAGAACAAGAGCAGCGAAAGAAGAGGAAGAAGCAACAACAACAGAAGATGAAGAGGAGC AACTAGCATCAACACCAGAAGAGGAAGACAATGAATGAATGATGAAGTTTCTTCATTCAG CCATATGGCTCTTAATAATGTGTACTGTAATTTAATATTAGTAAGGATGGATCCTAATTT ATTTTGTAGCTAGGAGCGAAACTGTTAAGATGGTGTAGGCCAGTGAAAAGTGGTGAGGTT GCAATCAAACAAGGTGTTGTGTGTATGCCTAATCCAATATAAAGAAGCCCTAAAAAAGCT CCGAATTTGGCAGGAAATTACAGCGGAAGTGCCACACACATCCATCCATCCCCGGTCAGA TCCACCTCCGCCGCCGGCCTCCCAGCTCGCGCGACCTCAAGATCCGGCGCCGTCGCCCCT GCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCGGTAATGGCGCCGTCGCCCCTGCCC CTGCCCCTGCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCTCCCCGCACCGTCTCCG TCGCCGCTGCCTCCTCCACGCCCGAGCAGCAGGTTCAGGTTCATGTTCATGTTGAGGACC TACAAAGCTCAAAGGACCCAGATGGTACTGGCATAAATAATGCAGCAGCCTTCACGCATT TGGAAGGCGCATGCCGAGGACGGGTCGGGGCTGGACATGGAGAGGAACGGATGCAACGGC CACAATAACGTTAACCGCTGCCCGTCCCCTCTCCAGCCCGTCGCCTCAGCTGGCCAGCAC TCCGAAAGCGCCGCCGCCTACTTCTCTTGGCCCACGTCTACGCTGATGCACGGCTCCGCC GAAGGCCGCGCCAACTACTTTGGGAACCTGCAGAAGGGCGTGCTCCCGGGCCACCTTGCC CGCCTGCCCAAAGGCCAGCAGGCCACCACCTTGCTCGATCTCATGATTATAAGGGCGTTC CACAGCAAGATCCTGCGCCGCTTCAGCCTTGGCACCGCCATAGGCTTCCGGATCAGGAAG GGGACGTTGACCGACACGCCCGCCATCCTCGTCTTTGTTGCTCGCAAGGTTAACAAGAAG TGGCTCAGGCCTACGCAGTGCCTTCCGGCCGCCCTCGAGGGGCCTGGGGGTGTGTGGTGT GATGTCGATGTTGTTGAATTCTCGTATTATGGTGCACCCGCACCCACTCCAAAGGAACAA CTGTACGACGAGCTTGTTGATGGGCTGCGTGGCAGCGATCCATCTATAGGCTCTGGTTCA CAGGTAGCTAGCCTTGAAACATATGGGACTTTGGGTGCCATCGTGAAGAGTCGAACTGGC AACAAGCAAGTAGGCTTCCTAACGAACAGACATGTTGCAGTTGACCTGGATTATCCTAAT CAAAAGATGTTCCATCCGTTGCCCCCTAATCTTGGACCTGGAGTTTACCTAGGTGCCGTT GAGAGAGCCACGTCTTTTATCACGGATGATGTTTGGTATGGTATATATGCGGGAACAAAC CCAGAAACATTTGTCCGGGCTGATGGTGCATTTATACCATTTGCGGACGACTTTGACATT ACTAATGTCAGCACTTCAGTTAAAGGAGTCGGACTCATTGGTGATATCAAGGCAATCGAT CTGCAGTCCCCGATTGGCAGTCTCATCGGGAAGCAAGTTGTGAAAGTTGGAAGAAGCTCA GGCCATACGACAGGGACCGTCATGGCATATGCTCTTGAATACAACGATGAGAAGGGCATA TGCTTTTTTACCGACTTCCTCGTCGTCGGGGAGAACCAGCAAACGTTTGATCTTGAAGGG GACAGCGGAAGCCTTATAATCTTGACAGGACAAGATGGTGAGAAGCCACAGCCTATAGGG ATTATATGGGGTGGCACGGCCAACCGTGGAAGGTTGAAGCTCAAAAGTGGGCAGGGCCCG GAGAACTGGACGAGTGGTGTTGATCTGGGGCGCCTCCTTGACCTCCTCGAGCTCGATCTG ATCACGACAAGCGAAGGGCTGCAAGAGGCCCTGGAGGAGCAGAGGATCACCCTAGCAGCC GCCGTGGCAGCGGCCAATTCTACGGCCACCGAGTCGTCGCCCGTGGCCGCCACACCGCAA GAAGCCGAGAAAGTGGACAAGATCTACGAGCCCCTGGGGATCAACATCCAGCAGCTCCCC CGGGACGGCCCCGCCAACTCGACGGAGCAGCCCTTCGGGCCCGGCGAGTTCCACGTCGAC ACGGTGGAAGGGATAAATAGCAGCAACGTGGAGGAGCGGCAGTTCATCCCGAACCTGATG GGCATGTCCTCGATGCGCGACGAGCAAGGAGGCAACGGCGAGCTGGAAAACAACAACAGC TGCAACCTGGAGAGCCCGGCGGAGGACAACATCTGCTTCTCGCTGCACCTGGGCGAGCGG GAGCCTAAGAGGCTCCGGTCCGACACGACGACGGTGGACATAGACCTGCAGAAATGACGG TTCCTTTCGTCGCCCCCCTCTGTATGCTGCGGGGTCGCCGTTGTTGTTGTTATCATTGGA GGCGATTGCGATTTGTGCATTGTATGCATTGGGATGGCAGAATAAAACCCCATTGATCGA TCTGTGAGATGAGGACCTCTTGTTGTATTGCTCGCTGGGACCCACAGAGTTTTACTACGT GTACTAGTTTCAGGTGAAAATGATTGTGCTGTCAGCTGTATGTGATTTGATTTAACTCCC AACTCCTCAGCCAACTAACCAGCATGTGAATGTGAATAATGGAAGGAAAATGCTACGGCC TACGGCCTGTGTGATGTGTATCTACCAACTGTCGAGTACTCCTAAAGGAGGAGTTGATAG CTTTCGTTTCAAATTTTTTTCGTCTTCCCTTTCACATTTGTCTGTTTTTTTTTCATTTGG TTTTTTCGTTCCTTCTTTCATCATCATATATTAATAATGTATTTATATGTAAGAATTAAT
Protein Sequence (605 aa)
>BART1_0-u32165.003 605 150831_barley_pseudomolecules MQQPSRIWKAHAEDGSGLDMERNGCNGHNNVNRCPSPLQPVASAGQHSESAAAYFSWPTS TLMHGSAEGRANYFGNLQKGVLPGHLARLPKGQQATTLLDLMIIRAFHSKILRRFSLGTA IGFRIRKGTLTDTPAILVFVARKVNKKWLRPTQCLPAALEGPGGVWCDVDVVEFSYYGAP APTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVA VDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIP FADDFDITNVSTSVKGVGLIGDIKAIDLQSPIGSLIGKQVVKVGRSSGHTTGTVMAYALE YNDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGQDGEKPQPIGIIWGGTANRGRLK LKSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQEALEEQRITLAAAVAAANSTATESS PVAATPQEAEKVDKIYEPLGINIQQLPRDGPANSTEQPFGPGEFHVDTVEGINSSNVEER QFIPNLMGMSSMRDEQGGNGELENNNSCNLESPAEDNICFSLHLGEREPKRLRSDTTTVD IDLQK