- Transcript BART1_0-u32165.002
- Transcript IDBART1_0-u32165.002
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 543119 | 542751 | + |
| chr5H | 2 | 543353 | 543268 | + |
| chr5H | 3 | 544004 | 543949 | + |
| chr5H | 4 | 544288 | 544118 | + |
| chr5H | 5 | 544850 | 544680 | + |
| chr5H | 6 | 545100 | 544945 | + |
| chr5H | 7 | 545338 | 545192 | + |
| chr5H | 8 | 545574 | 545503 | + |
| chr5H | 9 | 546156 | 545683 | + |
| chr5H | 10 | 546441 | 546260 | + |
| chr5H | 11 | 547246 | 546574 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 2.46926 | 3.40809 |
| morex | ETI | 0.338881 | 0.584056 | 2.05468 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0.53435 | 0.50562 | 0 |
| morex | ROO | 0 | 0 | 0.44924 |
| morex | ROO2 | 1.84972 | 3.95647 | 0.932497 |
| morex | NOD | 2.33776 | 1.54753 | 0.770698 |
| morex | RAC | 4.40387 | 5.13897 | 3.105 |
| morex | INF1 | 2.20622 | 5.01514 | 2.39514 |
| morex | INF2 | 2.76901 | 4.2472 | 7.39907 |
| morex | CAR5 | 3.85001 | 4.30564 | 1.12201 |
| morex | CAR15 | 2.10228 | 0.286506 | 0 |
| morex | LEM | 0 | 1.17364 | 0.251375 |
| morex | LOD | 3.98759 | 2.27723 | 3.48244 |
| morex | PAL | 1.86827 | 0.839614 | 2.80705 |
| morex | SEN | 0.786887 | 0.947156 | 0.416925 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os12g44340.1 | +2 | 0.0 | 719 | 450/481 (94%) | protein|ATMAP70 protein, putative, expressed |
| TAIR PP10 | AT1G68060 @ ARAPORT AT1G68060.1 @ TAIR |
+2 | 0.0 | 555 | 359/483 (74%) | Symbols: ATMAP70-1, MAP70-1 | microtubule-associated proteins 70-1 | chr1:25511392-25514226 REVERSE LENGTH=622 |
| BRACH PP3 | Bradi4g00250.1.p | +2 | 0.0 | 741 | 463/483 (96%) | pacid=32788741 transcript=Bradi4g00250.1 locus=Bradi4g00250 ID=Bradi4g00250.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2557 bp)
>BART1_0-u32165.002 2557 150831_barley_pseudomolecules GTAACATGCGATGCGATGGGCCTGCAAATGAATGAAATGACCATCCTCTCCTCTCCTCTC CTCTCCCACACACACACACTGTCATTCATGTGACCTGACCGCCATTAACACACTCTCTCC GACCGCCCCCCACAAGCACAGCGCAGGCGCAGGCGCATTGGCCGGCGTGCTTGCGATCGG GATTGCCGGCGGCGGGGGCCATGGCCGATCCGTACGGCGACGGCCGGGCGCTGAGGAACC ATCAGCAGGCGCCGGCACAGCAGCGGCCGAGGCTGAAGCCGGCGCTGGAGATGGAGGACC TCATCAGCCTGCTCCACGGCTCCGATCCCGTCCGCGTCGAGCTCACCCGCCTCGAGAACG ACCTCCACTATAAGGAGAAGGAGCTGGGCGACGCGCAGGCGGAGATCAAGGCCCTGCGCC TCTCCGAGCGGGCCCGCGAGAAGGCCGTCGAGGATAACTGGCAAAGGTGGATGGGAAGCT CAAGCTCACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGATCAACGACGA GAAGAAAGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAAGGGTTCATGC CGCGCAGAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCGCCGCTGGAGGCCGA GCTGAAACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAACAGGGCATTAGACCG TCTTACAAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTCAGATAGCACT AGCAAAAGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAATTGATGAAACAGAT CGAGATATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGCCAGAAGGTTGCTGA GGTTGAAAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGCGGTGC AGCCGCAAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATGAATGAGGAAATGAA AACTCTGGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGGGTCGCGGTAGTGGT GGCAAATGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAGCAATGGCTTGAAGA ACGGAGGCTTCTGCAAGGAGAAATGCAGCAACTCCGTGATAAACTTGCTATAGCAGAAAG GGCTGCAAGATCAGAAGCTCAACTGAAGGACAAGTTCCAGCTACGGCTTAAAGTGCTTGA GGAAGGATTGAGAATGTCGACATCTCGAACCAATGCAAGTGCCGCCCGCCGCCAGTCTAT TGGTGGCGCTGAGAGTGCATCCAAGACCAATGGCTTTCTATCGAAGCGGCCATCATTCCA GATGAGAACATCGGTATCTACCACCACGACTACGCTTGTGAACCATGCGAAGGGGGCATC CAAGTCTTTTGATGGAGGGTGTAGATCACTTGACCGTTATAAGGGCCATGTAAATGGGGT TGGCATGAACGTATCAACCGACTCCAGCGAGGATAAGGAGTCAAACAACTCAGATGAGAA GCCTAGTGAATTTACATCTGTTGAGTCGGAGGACACGGTGTCAGGTATGCTGTATGATAT GCTGCAAAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCATGAAAAGGACCAAAGCTTGAA AGACAAGGACGACGCAGTCGAGATGTTGGCCAAGAAAGTCGACACTTTAACAAAGGCGAT GGAGTCAGAGGCTAAGAAGATGAGACGGGATGTAGCTGCCATGGAGAAGGAGGTGGTGGC TATGCGATTAGAGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGCAGTTCAAGCGCCTC TGCCTCACAGGTGCCACCTGGAAGGACTCTGCCTCGGAGCNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGCACGCAACATGTGATGCTGCTGATA TGAAGCATTAAAAAGACCTTGGAGCACCTCCTGTGTAGTTAGTTGAATGATGGCATCCAG GGACCCTCTGCTGACTTGTGTGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCCCAGA AGTGTCGAGCCTGAGCCTGAGCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGCGGAA ATCAATCAATCAGCGACTCGGGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGCGGTG TTTTTATTCATTTCCTGTCGTGGAACCGAAAACACTTTGTTGTATAGGTATGGTGTGGCC TTGCAATATTTTTTGTTTGTAATCCTACCTACTCCCCAAGAGCTTGTGTGGTGTTTTATG CTAGCCAAGTTGTTTGTGAATAATAACATGATGATGATGATGATGATAGTGCAGTTAAGC TGGTGTGTCTTTCTCTGGAAGGTGAATTCCAATCTGTCTAGTGTAAAACTGCAGTCTCTG CAACGCACGGACATATTTCCTAGTGAAATATAAGAGCTTTTAGATCACTACTTTATAGAG GGAGTATCATTCAGTTTTTTTGGGACATCTGACAACC
Protein Sequence (449 aa)
>BART1_0-u32165.002 449 150831_barley_pseudomolecules MPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAERTVQIALAKASLV DDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVR DYQRKVQEMNEEMKTLDRELARAKVSANRVAVVVANEWKDGNDKVMPVKQWLEERRLLQG EMQQLRDKLAIAERAARSEAQLKDKFQLRLKVLEEGLRMSTSRTNASAARRQSIGGAESA SKTNGFLSKRPSFQMRTSVSTTTTTLVNHAKGASKSFDGGCRSLDRYKGHVNGVGMNVST DSSEDKESNNSDEKPSEFTSVESEDTVSGMLYDMLQKEVVALRKACHEKDQSLKDKDDAV EMLAKKVDTLTKAMESEAKKMRRDVAAMEKEVVAMRLEKEQDTKARRFGSSSASASQVPP GRTLPRSXXXXXXXXXXXXXXXXXSARNM