- Transcript BART1_0-u32165.001
- Transcript IDBART1_0-u32165.001
- Gene IDBART1_0-u32165
Barley RTD
Exon Structure of BART1_0-u32165.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr5H | 1 | 543119 | 542637 | + |
| chr5H | 2 | 543353 | 543268 | + |
| chr5H | 3 | 544004 | 543939 | + |
| chr5H | 4 | 544288 | 544118 | + |
| chr5H | 5 | 544850 | 544680 | + |
| chr5H | 6 | 545100 | 544945 | + |
| chr5H | 7 | 545338 | 545192 | + |
| chr5H | 8 | 545574 | 545503 | + |
| chr5H | 9 | 546156 | 545683 | + |
| chr5H | 10 | 546441 | 546260 | + |
| chr5H | 11 | 546956 | 546574 | + |
| chr5H | 12 | 548136 | 547767 | + |
| chr5H | 13 | 549098 | 548224 | + |
| chr5H | 14 | 549972 | 549423 | + |
| chr5H | 15 | 550199 | 550056 | + |
| chr5H | 16 | 551456 | 551216 | + |
| chr5H | 17 | 552197 | 551697 | + |
| chr5H | 18 | 553251 | 552317 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.80337 | 3.49419 | 6.16302 |
| morex | ETI | 0.912343 | 0.978132 | 1.07486 |
| morex | LEA | 2.8516 | 0.706862 | 1.09333 |
| morex | EPI | 0.268834 | 0.391503 | 0.523409 |
| morex | ROO | 2.60155 | 1.73907 | 1.88217 |
| morex | ROO2 | 1.92045 | 1.6789 | 1.98348 |
| morex | NOD | 5.77992 | 1.3568 | 2.68141 |
| morex | RAC | 2.11658 | 2.41198 | 3.33573 |
| morex | INF1 | 7.41044 | 6.41835 | 7.08622 |
| morex | INF2 | 7.24551 | 6.4682 | 12.7584 |
| morex | CAR5 | 8.05012 | 6.16071 | 9.97653 |
| morex | CAR15 | 1.18724 | 0.910534 | 1.89483 |
| morex | LEM | 0.918846 | 1.32163 | 1.50503 |
| morex | LOD | 2.65018 | 1.93647 | 1.90197 |
| morex | PAL | 1.36267 | 1.15686 | 1.48918 |
| morex | SEN | 1.13143 | 0.391295 | 0.753333 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g31470.2 | +2 | 0.0 | 967 | 526/607 (87%) | protein|peptidase, trypsin-like serine and cysteine proteases, putative, expressed |
| TAIR PP10 | AT2G35155 @ ARAPORT AT2G35155.1 @ TAIR |
+2 | 0.0 | 689 | 377/588 (64%) | Symbols: | Trypsin family protein | chr2:14819209-14821330 REVERSE LENGTH=579 |
| BRACH PP3 | Bradi4g00270.1.p | +2 | 0.0 | 1018 | 548/608 (90%) | pacid=32787831 transcript=Bradi4g00270.1 locus=Bradi4g00270 ID=Bradi4g00270.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6007 bp)
>BART1_0-u32165.001 6007 150831_barley_pseudomolecules GCGCGTGTGTGTGTTTTGCAGCAGAAAAGAAAAGAAAAGAAAAGAAAGGAGAAGGAGAGG CCCCACATGTAAGTCCATGAGTGAGTGAATGAATGAATGAATGACCACATGGCGGTAACA TGCGATGCGATGGGCCTGCAAATGAATGAAATGACCATCCTCTCCTCTCCTCTCCTCTCC CACACACACACACTGTCATTCATGTGACCTGACCGCCATTAACACACTCTCTCCGACCGC CCCCCACAAGCACAGCGCAGGCGCAGGCGCATTGGCCGGCGTGCTTGCGATCGGGATTGC CGGCGGCGGGGGCCATGGCCGATCCGTACGGCGACGGCCGGGCGCTGAGGAACCATCAGC AGGCGCCGGCACAGCAGCGGCCGAGGCTGAAGCCGGCGCTGGAGATGGAGGACCTCATCA GCCTGCTCCACGGCTCCGATCCCGTCCGCGTCGAGCTCACCCGCCTCGAGAACGACCTCC ACTATAAGGAGAAGGAGCTGGGCGACGCGCAGGCGGAGATCAAGGCCCTGCGCCTCTCCG AGCGGGCCCGCGAGAAGGCCGTCGAGGATCTTACCGAAGAACTGGCAAAGGTGGATGGGA AGCTCAAGCTCACCGAGTCTCTCCTGGAAAGCAAAAACCTTGAAGCGAAGAAGATCAACG ACGAGAAGAAAGCAGCGCTTGCCGCCCAGTTTGCAGCGGAGGCTACGCTGCGAAGGGTTC ATGCCGCGCAGAAGGACGATGACATGCCTCCCATCGAGGCCATCCTCGCGCCGCTGGAGG CCGAGCTGAAACTAGCCCGTCAAGAGATTGCAAAATTACAAGATGACAACAGGGCATTAG ACCGTCTTACAAAGTCTAAGGAAGCAGCTCTGCTGGAAGCAGAAAGGACCGTTCAGATAG CACTAGCAAAAGCTTCCTTGGTGGATGATCTGCAAAATAAAAACCAAGAATTGATGAAAC AGATCGAGATATGTCAGGAAGAGAACAAAATCTTGGACAGAATGCACCGCCAGAAGGTTG CTGAGGTTGAAAAGCTTACTCAGACCGTCAGAGAGCTAGAAGAAGCTGTTCTTGCTGGCG GTGCAGCCGCAAATGCTGTGAGGGACTATCAGCGGAAAGTTCAGGAGATGAATGAGGAAA TGAAAACTCTGGATCGTGAGCTTGCTCGTGCAAAGGTTTCAGCAAATAGGGTCGCGGTAG TGGTGGCAAATGAGTGGAAAGATGGCAATGATAAAGTAATGCCTGTTAAGCAATGGCTTG AAGAACGGAGGCTTCTGCAAGGAGAAATGCAGCAACTCCGTGATAAACTTGCTATAGCAG AAAGGGCTGCAAGATCAGAAGCTCAACTGAAGGACAAGTTCCAGCTACGGCTTAAAGTGC TTGAGGAAGGATTGAGAATGTCGACATCTCGAACCAATGCAAGTGCCGCCCGCCGCCAGT CTATTGGTGGCGCTGAGAGTGCATCCAAGACCAATGGCTTTCTATCGAAGCGGCCATCAT TCCAGATGAGAACATCGGTATCTACCACCACGACTACGCTTGTGAACCATGCGAAGGGGG CATCCAAGTCTTTTGATGGAGGGTGTAGATCACTTGACCGTTATAAGGGCCATGTAAATG GGGTTGGCATGAACGTATCAACCGACTCCAGCGAGGATAAGGAGTCAAACAACTCAGATG AGAAGCCTAGTGAATTTACATCTGTTGAGTCGGAGGACACGGTGTCAGGTATGCTGTATG ATATGCTGCAAAAGGAGGTTGTTGCTCTAAGGAAGGCTTGTCATGAAAAGGACCAAAGCT TGAAAGACAAGGACGACGCAGTCGAGATGTTGGCCAAGAAAGTCGACACTTTAACAAAGG CGATGGAGTCAGAGGCTAAGAAGATGAGACGGGATGTAGCTGCCATGGAGAAGGAGGTGG TGGCTATGCGATTAGAGAAAGAGCAGGATACGAAAGCAAGAAGGTTCGGCAGTTCAAGCG CCTCTGCCTCACAGGTGCCACCTGGAAGGACTCTGCCTCGGAGCNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGCACGCAACATGTGATGCTGCT GATATGAAGCATTAAAAAGACCTTGGAGCACCTCCTGTGTAGTTAGTTGAATGATGGCAT CCAGGGACCCTCTGCTGACTTGTGTGTAGAAAAAACAAGAAGGCATTGCATCTTGGTGCC CAGAAGTGTCGAGCCTGAGCCTGAGCCTGATCGATCGTGCCTGCTACATCTCGTGGTCGC GGAAATCAATCAATCAGCGACTCGGGTCGAGTGAAGTTAGTGTCGTTGATGAGATTTGGC GGTGTTTTTATTCATTTCCTGTCGTGGAACCGAAAACACTTTGTTGTATAGGAGCAGAAG AGAATCGCCATTCTGAACTACATATATAACTGCGATGACACAAAGGCTATGTGGATTCTT AGAATGAAAAGAGGACCATTTGCCAGATTTGTCCACACCTTGAGGAGCTCGGGGGCTGCT AGATGATAGCATCCACATCAGTGTGGAAGTGCAAGTGGCCATGTACCTTCATGTTGTTTG CCATAACGAGAGGTTCATGGTTATCCACAACATGTTCAGGAGATCAATGGAGATCATCTC AAGGTACTTCAAGCAAGTGCTCTATGTTGTTGGGGAGGTCAGAGGAGAGATGATAAAGTC ACCAATCGACCGGACTCCTACCAAGATGCACACTAGCCTAAGATGGTATCCGTACTTCAA GGATTGCACTGGGGCAATAGATGGTACTCATATCATTGCCATAGCGTCGAGGTCACAATC TGCAACATACAAGGGGAGGAAGCACTACATAGCTTGTTCTTGCATATTGCATTATGCATA ATCAAGGTCCTGCAATGTGGTTGTGATGAACCGGTGCTTCACGAGGAAGATATGACACCC AATGACGTTGACCTCGGTGGCTATGGTGTGGGGGCATTTGACAATGAAGCCTGAAAGATC GAAATGATGGAGTGAACACATGCAATGTGGAATAACACAGGTCAAACAAGAATCTGAAGT AGTAGAAGAAGAAGAACAAGAGCAGCGAAAGAAGAGGAAGAAGCAACAACAACAGAAGAT GAAGAGGAGCAACTAGCATCAACACCAGAAGAGGAAGACAATGAATGAATGATGAAGTTT CTTCATTCAGCCATATGGCTCTTAATAATGTGTACTGTAATTTAATATTAGTAAGGATGG ATCCTAATTTATTTTGTAGCTAGGAGCGAAACTGTTAAGATGGTGTAGGCCAGTGAAAAG TGGTGAGGTTGCAATCAAACAAGGTGTTGTGTGTATGCCTAATCCAATATAAAGAAGCCC TAAAAAAGCTCCGAATTTGGCAGGAAATTACAGCGGAAGTGCCACACACATCCATCCATC CCCGGTCAGATCCACCTCCGCCGCCGGCCTCCCAGCTCGCGCGACCTCAAGATCCGGCGC CGTCGCCCCTGCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCGGTAATGGCGCCGTC GCCCCTGCCCCTGCCCCTGCCCCTGCAAGCAGCGCAGCCCCTCTGACCACCTCTCCCCGC ACCGTCTCCGTCGCCGCTGCCTCCTCCACGCCCGAGCAGGTTCAGGTTCATGTTCATGTT GAGGACCTACAAAGCTCAAAGGACCCAGATGGTACTGGCATAAATAATGCAGCAGCCTTC ACGCATTTGGAAGGCGCATGCCGAGGACGGGTCGGGGCTGGACATGGAGAGGAACGGATG CAACGGCCACAATAACGTTAACCGCTGCCCGTCCCCTCTCCAGCCCGTCGCCTCAGCTGG CCAGCACTCCGAAAGCGCCGCCGCCTACTTCTCTTGGCCCACGTCTACGCTGATGCACGG CTCCGCCGAAGGCCGCGCCAACTACTTTGGGAACCTGCAGAAGGGCGTGCTCCCGGGCCA CCTTGCCCGCCTGCCCAAAGGCCAGCAGGCCACCACCTTGCTCGATCTCATGATTATAAG GGCGTTCCACAGCAAGATCCTGCGCCGCTTCAGCCTTGGCACCGCCATAGGCTTCCGGAT CAGGAAGGGGACGTTGACCGACACGCCCGCCATCCTCGTCTTTGTTGCTCGCAAGGTTAA CAAGAAGTGGCTCAGGCCTACGCAGTGCCTTCCGGCCGCCCTCGAGGGGCCTGGGGGTGT GTGGTGTGATGTCGATGTTGTTGAATTCTCGTATTATGGTGCACCCGCACCCACTCCAAA GGAACAACTGTACGACGAGCTTGTTGATGGGCTGCGTGGCAGCGATCCATCTATAGGCTC TGGTTCACAGGTAGCTAGCCTTGAAACATATGGGACTTTGGGTGCCATCGTGAAGAGTCG AACTGGCAACAAGCAAGTAGGCTTCCTAACGAACAGACATGTTGCAGTTGACCTGGATTA TCCTAATCAAAAGATGTTCCATCCGTTGCCCCCTAATCTTGGACCTGGAGTTTACCTAGG TGCCGTTGAGAGAGCCACGTCTTTTATCACGGATGATGTTTGGTATGGTATATATGCGGG AACAAACCCAGAAACATTTGTCCGGGCTGATGGTGCATTTATACCATTTGCGGACGACTT TGACATTACTAATGTCAGCACTTCAGTTAAAGGAGTCGGACTCATTGGTGATATCAAGGC AATCGATCTGCAGTCCCCGATTGGCAGTCTCATCGGGAAGCAAGTTGTGAAAGTTGGAAG AAGCTCAGGCCATACGACAGGGACCGTCATGGCATATGCTCTTGAATACAACGATGAGAA GGGCATATGCTTTTTTACCGACTTCCTCGTCGTCGGGGAGAACCAGCAAACGTTTGATCT TGAAGGGGACAGCGGAAGCCTTATAATCTTGACAGGACAAGATGGTGAGAAGCCACAGCC TATAGGGATTATATGGGGTGGCACGGCCAACCGTGGAAGGTTGAAGCTCAAAAGTGGGCA GGGCCCGGAGAACTGGACGAGTGGTGTTGATCTGGGGCGCCTCCTTGACCTCCTCGAGCT CGATCTGATCACGACAAGCGAAGGGCTGCAAGAGGCCCTGGAGGAGCAGAGGATCACCCT AGCAGCCGCCGTGGCAGCGGCCAATTCTACGGCCACCGAGTCGTCGCCCGTGGCCGCCAC ACCGCAAGAAGCCGAGAAAGTGGACAAGATCTACGAGCCCCTGGGGATCAACATCCAGCA GCTCCCCCGGGACGGCCCCGCCAACTCGACGGAGCAGCCCTTCGGGCCCGGCGAGTTCCA CGTCGACACGGTGGAAGGGATAAATAGCAGCAACGTGGAGGAGCGGCAGTTCATCCCGAA CCTGATGGGCATGTCCTCGATGCGCGACGAGCAAGGAGGCAACGGCGAGCTGGAAAACAA CAACAGCTGCAACCTGGAGAGCCCGGCGGAGGACAACATCTGCTTCTCGCTGCACCTGGG CGAGCGGGAGCCTAAGAGGCTCCGGTCCGACACGACGACGGTGGACATAGACCTGCAGAA ATGACGGTTCCTTTCGTCGCCCCCCTCTGTATGCTGCGGGGTCGCCGTTGTTGTTGTTAT CATTGGAGGCGATTGCGATTTGTGCATTGTATGCATTGGGATGGCAGAATAAAACCCCAT TGATCGATCTGTGAGATGAGGACCTCTTGTTGTATTGCTCGCTGGGACCCACAGAGTTTT ACTACGTGTACTAGTTTCAGGTGAAAATGATTGTGCTGTCAGCTGTATGTGATTTGATTT AACTCCCAACTCCTCAGCCAACTAACCAGCATGTGAATGTGAATAATGGAAGGAAAATGC TACGGCCTACGGCCTGTGTGATGTGTATCTACCAACTGTCGAGTACTCCTAAAGGAGGAG TTGATAGCTTTCGTTTCAAATTTTTTTCGTCTTCCCTTTCACATTTGTCTGTTTTTTTTT CATTTGGTTTTTTCGTTCCTTCTTTCATCATCATATATTAATAATGTATTTATATGTAAG AATTAAT
Protein Sequence (605 aa)
>BART1_0-u32165.001 605 150831_barley_pseudomolecules MQQPSRIWKAHAEDGSGLDMERNGCNGHNNVNRCPSPLQPVASAGQHSESAAAYFSWPTS TLMHGSAEGRANYFGNLQKGVLPGHLARLPKGQQATTLLDLMIIRAFHSKILRRFSLGTA IGFRIRKGTLTDTPAILVFVARKVNKKWLRPTQCLPAALEGPGGVWCDVDVVEFSYYGAP APTPKEQLYDELVDGLRGSDPSIGSGSQVASLETYGTLGAIVKSRTGNKQVGFLTNRHVA VDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIP FADDFDITNVSTSVKGVGLIGDIKAIDLQSPIGSLIGKQVVKVGRSSGHTTGTVMAYALE YNDEKGICFFTDFLVVGENQQTFDLEGDSGSLIILTGQDGEKPQPIGIIWGGTANRGRLK LKSGQGPENWTSGVDLGRLLDLLELDLITTSEGLQEALEEQRITLAAAVAAANSTATESS PVAATPQEAEKVDKIYEPLGINIQQLPRDGPANSTEQPFGPGEFHVDTVEGINSSNVEER QFIPNLMGMSSMRDEQGGNGELENNNSCNLESPAEDNICFSLHLGEREPKRLRSDTTTVD IDLQK