- Transcript BART1_0-u30923.012
- Transcript IDBART1_0-u30923.012
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110196 | 594109293 | - |
| chr4H | 2 | 594111156 | 594111023 | - |
| chr4H | 3 | 594111612 | 594111468 | - |
| chr4H | 4 | 594112446 | 594112174 | - |
| chr4H | 5 | 594112961 | 594112592 | - |
| chr4H | 6 | 594113869 | 594113771 | - |
| chr4H | 7 | 594115363 | 594115181 | - |
| chr4H | 8 | 594116068 | 594115461 | - |
| chr4H | 9 | 594116642 | 594116575 | - |
| chr4H | 10 | 594116918 | 594116730 | - |
| chr4H | 11 | 594117137 | 594117057 | - |
| chr4H | 12 | 594119485 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.913702 | 2.18429 |
| morex | ETI | 0.154585 | 0 | 0.324803 |
| morex | LEA | 0.886862 | 0 | 0.42686 |
| morex | EPI | 0.136212 | 0.291371 | 0 |
| morex | ROO | 0 | 0.394272 | 0 |
| morex | ROO2 | 0 | 0.423292 | 0.13467 |
| morex | NOD | 0.439669 | 0.403258 | 0.277946 |
| morex | RAC | 0.484217 | 0.478833 | 0.408224 |
| morex | INF1 | 3.85467 | 0 | 2.10174 |
| morex | INF2 | 0.684922 | 0.447451 | 0.741674 |
| morex | CAR5 | 0.699942 | 0.478196 | 0 |
| morex | CAR15 | 0.612922 | 0.867511 | 0.981609 |
| morex | LEM | 0.908228 | 0.705178 | 0.410381 |
| morex | LOD | 1.97419 | 0.319208 | 0 |
| morex | PAL | 0.498869 | 0.331078 | 0.518455 |
| morex | SEN | 0 | 0.669379 | 0.46475 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +2 | 0.0 | 974 | 663/1203 (55%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+1 | 2e-131 | 389 | 190/298 (64%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +2 | 0.0 | 1364 | 851/1187 (72%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5320 bp)
>BART1_0-u30923.012 5320 150831_barley_pseudomolecules CCCCGATGGGCCGAAAGAAGCGCAGCCCCCCACCAAACCCTACTCCGCCCCCGCCCCCGC CCGCCGGCGCCCTCGTCCTCCGCCTCGCCGATGCGCCGGCCCCGGNCTCAACGACCCCGC CGCCCGCGCGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACCTCGC GCCCGACTCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCACCGA CAACCGCGCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACGAGCC ATCCGACCCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCCGCGC CGAGCTCCGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCAAGAC CCTCGGCGGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGGAGCT CCAGCTCCTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCACCAA GACCGTCGAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGCTGGA GCAGCAGCAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGTCACA GCAGGGAGATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCGCTGA TCGGAGAAAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGAATCA GGTGCGTGCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAACTAG CATTTCTGAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATGCGGC ACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGTTCTG GTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGCATGT GAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACTGGGC AGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAGCGCT TGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCATCCGA TAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACAATGA GGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGTCTGA TGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTGTGAA GCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACGAACT TAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCACTCTG CATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACCTAAT GCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAGATTG TTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCATCACT GATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTGATAC TGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTATCAGA GTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGATCGA CAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCATTGA GGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACCGTGG GGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGTTGTT GGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAGTTCG CGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTGACTA TGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATTCAGT GGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGATAGA CGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAACCTGC TGCTTTAAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATGCAGC AAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAGGGGT TGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTAGGAG ATCCAAGGATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGC AGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAA ACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACA ACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGA GGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATAT TGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAG TGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTT TCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCC ACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACA TGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGG GAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAG CACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGC ATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAGCTGA CTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTTCTTC GGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGC AATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGT GCACCAAAGCCTCGCAGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAA TGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTATCCAGGTAAATGTCAAGACTTG TGAAGCTTATGCAAGTGTGCTTTGTTTTTTCACATAATATTCGTCCATATGCAGTCATTA TGGCATTTGAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAGCATATT GAAGATCCTTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAAGCATCT GAGGGGCAAGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTAT CCTAACAACAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTG ATCTTTGAGTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCAC GAGGGCAATTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTT TTTGGAATGGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGA CTTAAGTATACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATG ATGTGCCTAGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCT TGTGATCCTGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGT TCCCCTCATGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGAC ATAGCTGCAACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGT CTAGATCGAGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTAT CATTGCTTTGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTA ACAAGATATATAAACCTACCCACTGAAGCAAACCTCCCTTCCTTTTTTTTATACCCTACC TATACCTAGTCAAGAAAAATCATCTTTTATTTGTTCCTTGTTTGTGTAGGTTATTGGTAG CTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTT TGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCC GTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCG ATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCA CTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAA AAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCA TATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCA TGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATA TATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCG GGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGG GGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTT TCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGA
Protein Sequence (1211 aa)
>BART1_0-u30923.012 1211 150831_barley_pseudomolecules PDGPKEAQPPTKPYSAPAPARRRPRPPPRRCAGPXLNDPAARARHHQAALLAARRAVDLA PDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDPEPHSLRLPAPDPDQLRA ELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLLPAAPAPRRPNEIKKATK TVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGDEPPSSSSQSTASGHRAD RRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKTSISELKSYYKTHKDKDVADAA PAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREHVSAIPRQVQAMLPQEIDADWA AMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSSDNWSIKDKSDTSESSASPHNE ECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLVKHKNISVNHLNRVIQYAMDEL RGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDLMQSCGLSRSSEKDGELGDRDC FPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVDTDEFLSWLYAGSPPIGEQLSE WNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSIEEGVLAVNNIILEEQRLRDRG GRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEVRASHFGYDEGFSGMTSRQCDY DGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKIDARIMRSVALMQQLDLKLEPA ALNHLEELADKDARERSDAARDAFLAELALDAEKSANKGVDKKLTHEKSKDKKRMKDSRR SKDIKDLSWSDQYIVRQDSADEETSEQAQTLVDCDDFDGKLSLSDEYSNEQEEELRHRVQ LEAEERKLEETLEYQRRIEEEAKQKHLAEQSRSTSSAPDIGTNGYSTDVNSSVHQDNHQS APNNVSPAYLEGIKFGDFRFPKVPSREKNSSSDFCGVDLPQKTENNRREKPNGLCSPGAH ALTSNNVDFTKPALKMNGVGKYAQNTKLATNPLIQRSKSSTSQPHKKYIQGAVHNGDDSA SSRQNGTAALRWSSSGKAADYSSNSYQDGRQNELPPVLSSDDPWNANKAEKADKGAISPA IVCIEDDSDKRFEEDLRKAVHQSLAGTSNGKEVYGAGLKNAAGEYNCFLNVIIQVNVKTC EAYASVLCFFT