Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G074360	99.3	-	-	10357	2285	Partial-Overlap

Transcripts from Gene BART1_0-u30923

Transcript	Length(bp)	Description
BART1_0-u30923.001	5418	5418 bp MSTRG.30923.1 MSTRG.30923
BART1_0-u30923.002	5415	5415 bp MSTRG.30923.2 MSTRG.30923
BART1_0-u30923.003	5099	5099 bp MSTRG.30923.3 MSTRG.30923
BART1_0-u30923.004	5282	5282 bp MSTRG.30923.4 MSTRG.30923
BART1_0-u30923.005	5268	5268 bp MSTRG.30923.5 MSTRG.30923
BART1_0-u30923.006	4275	4275 bp MSTRG.30923.6 MSTRG.30923
BART1_0-u30923.007	4243	4243 bp MSTRG.30923.7 MSTRG.30923
BART1_0-u30923.008	4977	4977 bp MSTRG.30923.8 MSTRG.30923
BART1_0-u30923.009	4977	4977 bp MSTRG.30923.9 MSTRG.30923
BART1_0-u30923.010	2996	2996 bp MSTRG.30923.10 MSTRG.30923
BART1_0-u30923.011	6277	6277 bp MSTRG.30923.11 MSTRG.30923
BART1_0-u30923.012	5320	5320 bp MSTRG.30923.12 MSTRG.30923
BART1_0-u30923.013	2600	2600 bp MSTRG.30923.13 MSTRG.30923

Exon Structure of BART1_0-u30923

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g06950.1	+3	0.0	950	660/1219 (54%)	protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10	AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR	+3	1e-116	409	282/802 (35%)	Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607
BRACH PP3	Bradi1g74000.4.p	+3	0.0	1333	823/1165 (71%)	pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016579	protein deubiquitination
GO:0003676	nucleic acid binding
GO:0005975	carbohydrate metabolic process
GO:0016021	integral component of membrane
GO:0030246	carbohydrate binding
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
GO:0004565	beta-galactosidase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons