- Transcript BART1_0-u30923.011
- Transcript IDBART1_0-u30923.011
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109278 | - |
| chr4H | 2 | 594110502 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594113869 | 594112873 | - |
| chr4H | 8 | 594115363 | 594115181 | - |
| chr4H | 9 | 594116068 | 594115461 | - |
| chr4H | 10 | 594116642 | 594116575 | - |
| chr4H | 11 | 594117137 | 594116730 | - |
| chr4H | 12 | 594119357 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.167405 | 1.49567 | 0.345031 |
| morex | ETI | 0.535677 | 0.383135 | 0.735638 |
| morex | LEA | 0.996143 | 2.1923 | 1.73234 |
| morex | EPI | 0.158708 | 0.747242 | 0.536822 |
| morex | ROO | 0 | 0.789163 | 0.411916 |
| morex | ROO2 | 0 | 0.118091 | 0.0489594 |
| morex | NOD | 0.880196 | 0.379955 | 0.317479 |
| morex | RAC | 0.636422 | 0.789981 | 0.862068 |
| morex | INF1 | 2.10561 | 3.6065 | 3.72922 |
| morex | INF2 | 8.92452 | 4.97285 | 7.68078 |
| morex | CAR5 | 4.03596 | 3.01787 | 2.33262 |
| morex | CAR15 | 1.82046 | 0.900496 | 1.58604 |
| morex | LEM | 0.933568 | 0.976221 | 0.8097 |
| morex | LOD | 0.465542 | 0.560104 | 0.409032 |
| morex | PAL | 0.217365 | 0.533827 | 0.19883 |
| morex | SEN | 0.697394 | 0.235297 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +3 | 0.0 | 950 | 660/1219 (54%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+3 | 1e-116 | 409 | 282/802 (35%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +3 | 0.0 | 1333 | 823/1165 (71%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6277 bp)
>BART1_0-u30923.011 6277 150831_barley_pseudomolecules CGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACCTCGCGCCCGACT CCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCACCGACAACCGCG CCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACGAGCCATCCGACC CGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCCGCGCCGAGCTCC GCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCAAGACCCTCGGCG GCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGGAGCTCCAGCTCC TGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCACCAAGACCGTCG AGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGCTGGAGCAGCAGC AGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGTCACAGCAGGGAG ATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCGCTGATCGGAGAA AGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGAATCAGGTGCGTG CGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAACTAGCATTTCTG AGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATGCGGCACCTGCGG TGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGTTCTGGTTATGTG GCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGCATGTGAGTGCAA TACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACTGGGCAGCAATGC TCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAGCGCTTGAGGAAG AGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCATCCGATAATTGGA GTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACAATGAGGAGTGTG ATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGTCTGATGATGATG AAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTGTGAAGCATAAAA ACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACGAACTTAGAGGGA TGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCACTCTGCATTTGCT TCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACCTAATGCAGTCCT GTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAGATTGTTTCCCCA AAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCATCACTGATCCTTG ATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTGATACTGATGAAT TCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTATCAGAGTGGAACT GTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGATCGACAAGGAGG CATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCATTGAGGAGGGTG TGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACCGTGGGGGGCGGT ATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGTTGTTGGAGACCA GATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAGTTCGCGCCTCAC ACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTGACTATGATGGGG CAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATTCAGTGGTGCCGT CGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGATAGACGCTAGGA TTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAACCTGCTGCTTTAG TTGATTATCGATCAATTCTTCTCCCCCTCCTGAAATCCTTCTTGCGAGTTTGTATACTGC ATCCCTTTACACCTGATTTTTATATTGCTTTGTGGTCTTGTTCATTTCGTAACTATTGTT ATGGTGTGGTGATCTAGAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGAT CTGATGCAGCAAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAA ACAAAGGGGTTGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGG ATTCTAGGAGATCCAAGGATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCC AGGACAGTGCAGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACT TTGACGGCAAACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGC ATAGAGTACAACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGC GGATAGAGGAGGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAG CTCCTGATATTGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATA ACCATCAAAGTGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTG ATTTTCGCTTTCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTG TGGACCTGCCACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTC CTGGAGCACATGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGA ACGGAGTTGGGAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGT CTAAGAGCAGCACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTG ATGATAGTGCATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCA AAGCAGCTGACTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTG TGCTTTCTTCGGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAA TCTCACCTGCAATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCA GAAAAGCAGTGCACCAAAGCCTCGGTACATCAATGCTGTTCTCTTCCTCTCTTCACAATC TCTTGTCTTGGGCCTTGAAAGCCCATGGATATATCTATTCCACAACTAGTCAGCATCATT AATAAGCTCTTGTATTGTTTTAAGGTGTTCTTAAATTTTACAAGTGTGTAGTTGTGATTT ATGTTGCACAGAACATTCTTTCCTTGTATATACTGTTTGACTTGAATTGGAGCATATGCA TGGTGACATCTAGTTTGACTTTAGCACCGACACAACTTAGATGGTTTGTGAGATAGAATT GTAGGGTTCAAATGTAATTCTGATAAGATCTATAATTTTACATGGCTATGCATTAAATAT TACCTTACCTATAAGAGCTGCAGTTTTGAGGGATCTATGCTTGGTTAGGACTTCTCCCTC CTTTCCTAAATATAAGTCATTTTAGAGATTCCACTACGAAATGCATACGAATGTATATAG ACATACTTTAGAGTGTAAATTCACTTATTTTGCTTCGTATGTAGTCCATAGTGGAATCTC TAAAAAGACTTGCGCTCCGTATTCAAGAATGGAGGGAGTAGAAGAGTATGCCTTTTGTCA TTTTCCTGTGGGTTCATTATCATTATAGATTTCTGGATTGTATGCTGGTGCTACTACATG ATCAGTTTCATCCTGTAAACACGACACTCCGATATTAATTCTCTGTGGTCCCTGCCCCAC TTCCATTTCCAGCATGATCTACTACTGCTAATATTATCATTTATGTCTGTTATGTTGTCC TTTGTAATTTGGAATTATACTTTAAGCTTATTCTTCCACTAATGATGATGCAGCAGGCAC TTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGCTGGAGAATACAACTG TTTCCTGAATGTGATTATCCAGTCATTATGGCATTTGAAGCGGTTTCGACACGAGTTCCT TAAAACATCATCACTGCATAAGCATATTGAAGATCCTTGTGCTGTCTGTGCATTATATAA TATATTCGTTGACTTGAGCAAAGCATCTGAGGGGCAAGGAGAAGCTGTTGCACCTACTTC TTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTCTTTCAGGAGGGACAAAT GAATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTGCATAAGTCGTACACTTC TCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATCGGCTCATGGGACTGTGC AAGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTCTATGAACGGATGAACTG CCACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCATTCTTCCACAATATCAA TGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCATTTGATGATCTTTTGAA GACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTTGGCGGTTGCGGAAAACC GAATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTTACAGTTGTTTTGGGATG GCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTGGCTGGTATTTCGACTGA GATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGCAAACATTTTCTTGTGTC AGTGTTTCTGTGAATCACATGAGGCAGTTCAATGTCATGTTTGTGTACCACATTACCTGC AGTAGCCAGCTACCCAAGTCAGTTCCTGTTATTCTGCATTTTGTGGTAAGACGGAGCATC CATTCAAGTTAGATTTTGAATAGGAACTGATATTTGCTTGGTCATCTCTAAACCATTGTA TCAGGACACGTAATTGTAGCAGGCATGAACTATCACTGTATTTCTGTATATCCAGTAATT CAAGAGTATTGAAACGTATCAGCTAAAGCATCTAACGTGAGTTGTATTTTGATATTTCTT ACACATGCAGGTTTGTTACTATGGGCAGCATTATCATTGCTTTGCTTTCGAGGATGAGCA CTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAGCTGGGATGATGTGGTCAT TATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTTGAAGCTGCAAATTAATT TTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCCGTGGTGTGGTTAACATGT CTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCGATAGAATACAAAATTCGT TTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCACTTGCCTGTCGGTTTTGT CGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAAAAGGAGAGAAGTGGTGAT ATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCATATCCTGTCGAATGCGAT TTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCATGTGCTGCCCCAGAGAAA TTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATATATACGGTTTTTTTGTGC TTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCGGGGGGTATCAAAGAAAAT GGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGGGGTTTCTTATCATCTGTA GTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTTTCGCTGGCCATGACGAAC ACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGT
Protein Sequence (784 aa)
>BART1_0-u30923.011 784 150831_barley_pseudomolecules RHHQAALLAARRAVDLAPDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDP EPHSLRLPAPDPDQLRAELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLL PAAPAPRRPNEIKKATKTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGD EPPSSSSQSTASGHRADRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKTSISE LKSYYKTHKDKDVADAAPAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREHVSAI PRQVQAMLPQEIDADWAAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSSDNWS IKDKSDTSESSASPHNEECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLVKHKN ISVNHLNRVIQYAMDELRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDLMQSC GLSRSSEKDGELGDRDCFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVDTDEF LSWLYAGSPPIGEQLSEWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSIEEGV LAVNNIILEEQRLRDRGGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEVRASH FGYDEGFSGMTSRQCDYDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKIDARI MRSVALMQQLDLKLEPAALVDYRSILLPLLKSFLRVCILHPFTPDFYIALWSCSFRNYCY GVVI