- Transcript BART1_0-u30923.010
- Transcript IDBART1_0-u30923.010
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109276 | - |
| chr4H | 2 | 594110502 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112958 | 594112592 | - |
| chr4H | 7 | 594113869 | 594113771 | - |
| chr4H | 8 | 594115363 | 594115181 | - |
| chr4H | 9 | 594116068 | 594115461 | - |
| chr4H | 10 | 594116646 | 594116575 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.63583 | 2.46146 | 0 |
| morex | ETI | 0.461011 | 0.658861 | 0.478513 |
| morex | LEA | 1.29605 | 1.80622 | 2.31187 |
| morex | EPI | 2.3905 | 4.35802 | 1.06256 |
| morex | ROO | 1.56823 | 0.800231 | 0 |
| morex | ROO2 | 2.31149 | 1.24998 | 0.966167 |
| morex | NOD | 1.26018 | 1.32572 | 0.107434 |
| morex | RAC | 0.535866 | 0.467698 | 0.529386 |
| morex | INF1 | 0 | 4.83121 | 1.37658 |
| morex | INF2 | 1.7439 | 3.52216 | 1.6377 |
| morex | CAR5 | 1.13274 | 0.530904 | 2.43137 |
| morex | CAR15 | 0 | 0.231124 | 0.00885339 |
| morex | LEM | 0.616232 | 0.731179 | 0.971605 |
| morex | LOD | 0.408633 | 1.15071 | 1.81638 |
| morex | PAL | 1.25234 | 1.06765 | 1.20379 |
| morex | SEN | 1.20187 | 1.86683 | 1.74323 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +1 | 0.0 | 401 | 201/265 (76%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+1 | 4e-107 | 339 | 167/268 (62%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +1 | 0.0 | 499 | 235/264 (89%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2996 bp)
>BART1_0-u30923.010 2996 150831_barley_pseudomolecules CTAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGCAGATGAGGAAAC ATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAAACTTTCACTAAG TGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACAACTTGAAGCAGA GGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGAGGAGGCAAAGCA GAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATATTGGGACAAATGG TTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAGTGCACCCAATAA TGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTTTCCTAAAGTTCC CTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCCACAAAAGACTGA GAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACATGCATTAACCAG CAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGGGAAATATGCTCA GAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAGCACTAGCCAACC ACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGCATCTAGTCGACA AAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAGCTGACTATTCTAGTAA CAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTTCTTCGGATGATCCATG GAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGCAATTGTATGTAT CGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGTGCACCAAAGCCT CGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGCTGGAGAATA CAACTGTTTCCTGAATGTGATTATCCAGGTAAATGTCAAGACTTGTGAAGCTTATGCAAG TGTGCTTTGTTTTTTCACATAATATTCGTCCATATGCAGTCATTATGGCATTTGAAGCGG TTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAGCATATTGAAGATCCTTGTGCT GTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAAGCATCTGAGGGGCAAGGAGAA GCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTC TTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTG CATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATC GGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTC TATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCA TTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCA TTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTT GGCGGTTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTT ACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTG GCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGC AAACATTTTCTTGTGTCAGTGTTTCTGTGAATCACATGAGGCAGTTCAATGTCATGTTTG TGTACCACATTACCTGCAGTAGCCAGCTACCCAAGTCAGTTCCTGTTATTCTGCATTTTG TGGTAAGACGGAGCATCCATTCAAGTTAGATTTTGAATAGGAACTGATATTTGCTTGGTC ATCTCTAAACCATTGTATCAGGACACGTAATTGTAGCAGGCATGAACTATCACTGTATTT CTGTATATCCAGTAATTCAAGAGTATTGAAACGTATCAGCTAAAGCATCTAACGTGAGTT GTATTTTGATATTTCTTACACATGCAGGTTTGTTACTATGGGCAGCATTATCATTGCTTT GCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAGC TGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTT GAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCCG TGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCGA TAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCAC TTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAAA AGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCAT ATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCAT GTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATAT ATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCGG GGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGGG GTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTTT CGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTA
Protein Sequence (258 aa)
>BART1_0-u30923.010 258 150831_barley_pseudomolecules MQSLWHLKRFRHEFLKTSSLHKHIEDPCAVCALYNIFVDLSKASEGQGEAVAPTSLRIAL SKSYPNNRFFQEGQMNDASEVLGVIFECLHKSYTSRAECHAKSHEGNSIGSWDCASDFCI AHCLFGMDVYERMNCHNCGLESRRLKYTSFFHNINASSLRTAKMMCLDPFDDLLKTVIMN DQLACDPDVGGCGKPNHIHHILSSSPHVFTVVLGWQNSKESVDDIAATLAGISTEIDISV FYRGLDRGSKHFLVSVFL