- Transcript BART1_0-u30923.009
- Transcript IDBART1_0-u30923.009
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109264 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112680 | 594112592 | - |
| chr4H | 7 | 594112961 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594119369 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0000000562826 | 1.50079 | 0.000692458 |
| morex | ETI | 0.406303 | 0 | 0 |
| morex | LEA | 3.41277 | 0.521956 | 0.050237 |
| morex | EPI | 2.46833 | 1.00278 | 1.17981 |
| morex | ROO | 0 | 0.0995602 | 0.284425 |
| morex | ROO2 | 0.848159 | 0.28839 | 1.23004 |
| morex | NOD | 0.814469 | 2.04898 | 6.41204 |
| morex | RAC | 0.0000000470594 | 1.09048 | 0 |
| morex | INF1 | 10.7656 | 2.53349 | 6.10802 |
| morex | INF2 | 5.05619 | 3.25259 | 1.33876 |
| morex | CAR5 | 0.00000330571 | 0.583006 | 0.153956 |
| morex | CAR15 | 0.0095272 | 0.00014422 | 0.196749 |
| morex | LEM | 0.000062109 | 0.799081 | 0.348544 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.00000285068 | 0.00000000017362 | 0 |
| morex | SEN | 1.44381 | 0.815755 | 0.00623152 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +3 | 0.0 | 1016 | 676/1203 (56%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.1 @ TAIR |
+3 | 3e-120 | 416 | 286/807 (35%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1606 |
| BRACH PP3 | Bradi1g74000.4.p | +3 | 0.0 | 1402 | 846/1162 (73%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4977 bp)
>BART1_0-u30923.009 4977 150831_barley_pseudomolecules CCGCCGCCCGCGCGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACC TCGCGCCCGACTCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCA CCGACAACCGCGCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACG AGCCATCCGACCCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCC GCGCCGAGCTCCGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCA AGACCCTCGGCGGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGG AGCTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCA CCAAGACCGTCGAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGC TGGAGCAGCAGCAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGT CACAGCAGGGAGATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCG CTGATCGGAGAAAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGA ATCAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAA CTAGCATTTCTGAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATG CGGCACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGT TCTGGTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGC ATGTGAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACT GGGCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAG CGCTTGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCAT CCGATAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACA ATGAGGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGT CTGATGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTG TGAAGCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACG AACTTAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCAC TCTGCATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACC TAATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAG ATTGTTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCAT CACTGATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTG ATACTGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTAT CAGAGTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGA TCGACAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCA TTGAGGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACC GTGGGGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGT TGTTGGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAG TTCGCGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTG ACTATGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATT CAGTGGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGA TAGACGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAAC CTGCTGCTTTAGTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAATCCTTCTTGCGAA ACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATGCAGCAAGAGACG CCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAGGGGTTGATAAAA AACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTAGGAGATCCAAGG ATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGCAGATGAGG AAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAAACTTTCAC TAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACAACTTGAAG CAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGAGGAGGCAA AGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATATTGGGACAA ATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAGTGCACCCA ATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTTTCCTAAAG TTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCCACAAAAGA CTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACATGCATTAA CCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGGGAAATATG CTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAGCACTAGCC AACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGCATCTAGTC GACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAGCTGACTATTCTA GTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTTCTTCGGATGATC CATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGCAATTGTAT GTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGTGCACCAAA GCCTCGCAGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGCTG GAGAATACAACTGTTTCCTGAATGTGATTATCCAGCATCTGAGGGGCAAGGAGAAGCTGT TGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTCTTTCA GGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTGCATAA GTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATCGGCTC ATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTCTATGA ACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCATTCTT CCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCATTTGA TGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTTGGCGG TTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTTACAGT TGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTGGCTGG TATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGCAAACA TTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTATCATTGCTTTGCTTTCGAGGA TGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAGCTGGGATGATGT GGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTTGAAGCTGCAAA TTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCCGTGGTGTGGTTA ACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCGATAGAATACAAA ATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCACTTGCCTGTCGG TTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAAAAGGAGAGAAGT GGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCATATCCTGTCGAA TGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCATGTGCTGCCCCA GAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATATATACGGTTTTT TTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCGGGGGGTATCAAA GAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGGGGTTTCTTATCA TCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTTTCGCTGGCCATG ACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTATCTTGCTGTTTG
Protein Sequence (1184 aa)
>BART1_0-u30923.009 1184 150831_barley_pseudomolecules AARARHHQAALLAARRAVDLAPDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDE PSDPEPHSLRLPAPDPDQLRAELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLE LQLLPAAPAPRRPNEIKKATKTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQS QQGDEPPSSSSQSTASGHRADRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKT SISELKSYYKTHKDKDVADAAPAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREH VSAIPRQVQAMLPQEIDADWAAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSS DNWSIKDKSDTSESSASPHNEECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLV KHKNISVNHLNRVIQYAMDELRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDL MQSCGLSRSSEKDGELGDRDCFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVD TDEFLSWLYAGSPPIGEQLSEWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSI EEGVLAVNNIILEEQRLRDRGGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEV RASHFGYDEGFSGMTSRQCDYDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKI DARIMRSVALMQQLDLKLEPAALVDYRSILLPLLKSFLRNHLEELADKDARERSDAARDA FLAELALDAEKSANKGVDKKLTHEKSKDKKRMKDSRRSKDIKDLSWSDQYIVRQDSADEE TSEQAQTLVDCDDFDGKLSLSDEYSNEQEEELRHRVQLEAEERKLEETLEYQRRIEEEAK QKHLAEQSRSTSSAPDIGTNGYSTDVNSSVHQDNHQSAPNNVSPAYLEGIKFGDFRFPKV PSREKNSSSDFCGVDLPQKTENNRREKPNGLCSPGAHALTSNNVDFTKPALKMNGVGKYA QNTKLATNPLIQRSKSSTSQPHKKYIQGAVHNGDDSASSRQNGTAALRWSSSGKAADYSS NSYQDGRQNELPPVLSSDDPWNANKAEKADKGAISPAIVCIEDDSDKRFEEDLRKAVHQS LAGTSNGKEVYGAGLKNAAGEYNCFLNVIIQHLRGKEKLLHLLL