- Transcript BART1_0-u30923.008
- Transcript IDBART1_0-u30923.008
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109261 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112680 | 594112592 | - |
| chr4H | 7 | 594112958 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594119369 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.00000000466736 | 2.17421 | 0.183338 |
| morex | ETI | 0.0142805 | 0 | 0 |
| morex | LEA | 4.66113 | 2.0237 | 1.54735 |
| morex | EPI | 0.287698 | 0.00264166 | 0.252239 |
| morex | ROO | 0 | 0.126634 | 5.28875 |
| morex | ROO2 | 0.651564 | 0.257998 | 0.00000206786 |
| morex | NOD | 2.54423 | 0.000346033 | 0.232484 |
| morex | RAC | 0.00000000131034 | 0.00000000056455 | 0.000000000152017 |
| morex | INF1 | 3.2091 | 0.00237795 | 0.146814 |
| morex | INF2 | 0.0397155 | 0.000056509 | 0.0604347 |
| morex | CAR5 | 0.0000100221 | 0.858999 | 1.49715 |
| morex | CAR15 | 0.619228 | 0.000000762413 | 0.008663 |
| morex | LEM | 1.30244 | 0.000000621592 | 0.291607 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.884335 | 0.000000000198686 | 0.301215 |
| morex | SEN | 0.00210684 | 0 | 1.39762 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +3 | 0.0 | 1020 | 676/1202 (56%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.1 @ TAIR |
+3 | 3e-120 | 416 | 286/807 (35%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1606 |
| BRACH PP3 | Bradi1g74000.4.p | +3 | 0.0 | 1407 | 846/1161 (73%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4977 bp)
>BART1_0-u30923.008 4977 150831_barley_pseudomolecules CCGCCGCCCGCGCGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACC TCGCGCCCGACTCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCA CCGACAACCGCGCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACG AGCCATCCGACCCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCC GCGCCGAGCTCCGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCA AGACCCTCGGCGGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGG AGCTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCA CCAAGACCGTCGAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGC TGGAGCAGCAGCAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGT CACAGCAGGGAGATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCG CTGATCGGAGAAAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGA ATCAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAA CTAGCATTTCTGAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATG CGGCACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGT TCTGGTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGC ATGTGAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACT GGGCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAG CGCTTGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCAT CCGATAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACA ATGAGGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGT CTGATGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTG TGAAGCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACG AACTTAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCAC TCTGCATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACC TAATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAG ATTGTTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCAT CACTGATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTG ATACTGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTAT CAGAGTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGA TCGACAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCA TTGAGGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACC GTGGGGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGT TGTTGGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAG TTCGCGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTG ACTATGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATT CAGTGGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGA TAGACGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAAC CTGCTGCTTTAGTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAATCCTTCTTGCGAA ACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATGCAGCAAGAGACG CCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAGGGGTTGATAAAA AACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTAGGAGATCCAAGG ATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGCAGATGAGG AAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAAACTTTCAC TAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACAACTTGAAG CAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGAGGAGGCAA AGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATATTGGGACAA ATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAGTGCACCCA ATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTTTCCTAAAG TTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCCACAAAAGA CTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACATGCATTAA CCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGGGAAATATG CTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAGCACTAGCC AACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGCATCTAGTC GACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAGCTGACTATTCTA GTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTTCTTCGGATGATC CATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGCAATTGTAT GTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGTGCACCAAA GCCTCGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGCTGGAG AATACAACTGTTTCCTGAATGTGATTATCCAGCATCTGAGGGGCAAGGAGAAGCTGTTGC ACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTCTTTCAGGA GGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTGCATAAGTC GTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATCGGCTCATG GGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTCTATGAACG GATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCATTCTTCCA CAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCATTTGATGA TCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTTGGCGGTTG CGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTTACAGTTGT TTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTGGCTGGTAT TTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGCAAACATTT TCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTATCATTGCTTTGCTTTCGAGGATGA GCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAGCTGGGATGATGTGGT CATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTTGAAGCTGCAAATTA ATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCCGTGGTGTGGTTAACA TGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCGATAGAATACAAAATT CGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCACTTGCCTGTCGGTTT TGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAAAAGGAGAGAAGTGGT GATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCATATCCTGTCGAATGC GATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCATGTGCTGCCCCAGAG AAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATATATACGGTTTTTTTG TGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCGGGGGGTATCAAAGAA AATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGGGGTTTCTTATCATCT GTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTTTCGCTGGCCATGACG AACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTATCTTGCTGTTTGGTG
Protein Sequence (1183 aa)
>BART1_0-u30923.008 1183 150831_barley_pseudomolecules AARARHHQAALLAARRAVDLAPDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDE PSDPEPHSLRLPAPDPDQLRAELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLE LQLLPAAPAPRRPNEIKKATKTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQS QQGDEPPSSSSQSTASGHRADRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKT SISELKSYYKTHKDKDVADAAPAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREH VSAIPRQVQAMLPQEIDADWAAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSS DNWSIKDKSDTSESSASPHNEECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLV KHKNISVNHLNRVIQYAMDELRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDL MQSCGLSRSSEKDGELGDRDCFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVD TDEFLSWLYAGSPPIGEQLSEWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSI EEGVLAVNNIILEEQRLRDRGGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEV RASHFGYDEGFSGMTSRQCDYDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKI DARIMRSVALMQQLDLKLEPAALVDYRSILLPLLKSFLRNHLEELADKDARERSDAARDA FLAELALDAEKSANKGVDKKLTHEKSKDKKRMKDSRRSKDIKDLSWSDQYIVRQDSADEE TSEQAQTLVDCDDFDGKLSLSDEYSNEQEEELRHRVQLEAEERKLEETLEYQRRIEEEAK QKHLAEQSRSTSSAPDIGTNGYSTDVNSSVHQDNHQSAPNNVSPAYLEGIKFGDFRFPKV PSREKNSSSDFCGVDLPQKTENNRREKPNGLCSPGAHALTSNNVDFTKPALKMNGVGKYA QNTKLATNPLIQRSKSSTSQPHKKYIQGAVHNGDDSASSRQNGTAALRWSSSGKAADYSS NSYQDGRQNELPPVLSSDDPWNANKAEKADKGAISPAIVCIEDDSDKRFEEDLRKAVHQS LGTSNGKEVYGAGLKNAAGEYNCFLNVIIQHLRGKEKLLHLLL