- Transcript BART1_0-u30923.005
- Transcript IDBART1_0-u30923.005
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109216 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112961 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117005 | - |
| chr4H | 14 | 594119487 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0122452 | 0.00000000356366 | 0.000000000277003 |
| morex | ETI | 0.384392 | 1.87692 | 1.92567 |
| morex | LEA | 0 | 0 | 0.790894 |
| morex | EPI | 0 | 0.0364912 | 0 |
| morex | ROO | 0.000123582 | 0.312403 | 0 |
| morex | ROO2 | 0.44879 | 0.000000000177837 | 1.10277 |
| morex | NOD | 0.00000428981 | 1.52082 | 0 |
| morex | RAC | 1.11293 | 1.82796 | 0 |
| morex | INF1 | 0.684686 | 3.81009 | 2.39274 |
| morex | INF2 | 1.49749 | 0.524737 | 2.46896 |
| morex | CAR5 | 0 | 0.748105 | 1.12141 |
| morex | CAR15 | 0 | 0 | 0.603944 |
| morex | LEM | 0.530534 | 1.49843 | 0 |
| morex | LOD | 3.42757 | 0.384009 | 2.05875 |
| morex | PAL | 0.3868 | 0.468436 | 2.53993 |
| morex | SEN | 0 | 0 | 0.729841 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +2 | 0.0 | 816 | 497/753 (66%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+2 | 3e-151 | 507 | 285/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +2 | 0.0 | 1056 | 551/692 (80%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5268 bp)
>BART1_0-u30923.005 5268 150831_barley_pseudomolecules CCCCCCGATGGGCCGAAAGAAGCGCAGCCCCCCACCAAACCCTACTCCGCCCCCGCCCCC GCCCGCCGGCGCCCTCGTCCTCCGCCTCGCCGATGCGCCGGCCCCGGNCTCAACGACCCC GCCGCCCGCGCGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACCTC GCGCCCGACTCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCACC GACAACCGCGCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACGAG CCATCCGACCCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCCGC GCCGAGCTCCGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCAAG ACCCTCGGCGGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGGAG CTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCACC AAGACCGTCGAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGCTG GAGCAGCAGCAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGTCA CAGCAGGGAGATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCGCT GATCGGAGAAAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGAAT CAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAACT AGCATTTCTGAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATGCG GCACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGTTC TGGTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGCAT GTGAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACTGG GCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAGCG CTTGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCATCC GATAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACAAT GAGGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGTCT GATGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTGTG AAGCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACGAA CTTAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCACTC TGCATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACCTA ATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAGAT TGTTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCATCA CTGATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTGAT ACTGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTATCA GAGTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGATC GACAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCATT GAGGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACCGT GGGGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGTTG TTGGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAGTT CGCGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTGAC TATGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATTCA GTGGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGATA GACGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAACCT GCTGCTTTAGTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAATCCTTCTTGCGAGTT TAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATGCAGCAAGAGA CGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAGGGGTTGATAA AAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTAGGAGATCCAA GGATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGCAGATGA GGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAAACTTTC ACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACAACTTGA AGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGAGGAGGC AAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATATTGGGAC AAATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAGTGCACC CAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTTTCCTAA AGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCCACAAAA GACTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACATGCATT AACCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGGGAAATA TGCTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAGCACTAG CCAACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGCATCTAG TCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAGCTGACTATTC TAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTTCTTCGGATGA TCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGCAATTGT ATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGTGCACCA AAGCCTCGCAGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGC TGGAGAATACAACTGTTTCCTGAATGTGATTATCCAGTCATTATGGCATTTGAAGCGGTT TCGACACGAGTTCCTTAAAACATCATCACTGCATAAGCATATTGAAGATCCTTGTGCTGT CTGTGCATTATATAATATATTCGTTGACTTGAGCAAAGCATCTGAGGGGCAAGGAGAAGC TGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTCTT TCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTGCA TAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATCGG CTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTCTA TGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCATT CTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCATT TGATGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTTGG CGGTTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTTAC AGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTGGC TGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGCAA ACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTATCATTGCTTTGCTTTCGA GGATGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAGCTGGGATGA TGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTTGAAGCTGC AAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCCGTGGTGTGG TTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCGATAGAATAC AAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCACTTGCCTGT CGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAAAAGGAGAGA AGTGGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCATATCCTGTC GAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCATGTGCTGCC CCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATATATACGGTT TTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCGGGGGGTATC AAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGGGGTTTCTTA TCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTTTCGCTGGCC ATGACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTATCTTGCTGTTTG GTGTTAGTTTTAGTTTATTTTTTTTGTGCAATTAGTATCAGAATTGCC
Protein Sequence (800 aa)
>BART1_0-u30923.005 800 150831_barley_pseudomolecules PPDGPKEAQPPTKPYSAPAPARRRPRPPPRRCAGPXLNDPAARARHHQAALLAARRAVDL APDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDPEPHSLRLPAPDPDQLR AELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLLPAAPAPRRPNEIKKAT KTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGDEPPSSSSQSTASGHRA DRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKTSISELKSYYKTHKDKDVADA APAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREHVSAIPRQVQAMLPQEIDADW AAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSSDNWSIKDKSDTSESSASPHN EECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLVKHKNISVNHLNRVIQYAMDE LRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDLMQSCGLSRSSEKDGELGDRD CFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVDTDEFLSWLYAGSPPIGEQLS EWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSIEEGVLAVNNIILEEQRLRDR GGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEVRASHFGYDEGFSGMTSRQCD YDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKIDARIMRSVALMQQLDLKLEP AALVDYRSILLPLLKSFLRV