- Transcript BART1_0-u30923.004
- Transcript IDBART1_0-u30923.004
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109199 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112958 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117005 | - |
| chr4H | 14 | 594119487 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.30061 | 0.000000000191345 | 0 |
| morex | ETI | 0.0149736 | 0.0236169 | 0.0534714 |
| morex | LEA | 0 | 0 | 0.0234583 |
| morex | EPI | 0 | 0.00162252 | 0 |
| morex | ROO | 0.615517 | 0.0146237 | 0 |
| morex | ROO2 | 0.0159507 | 0 | 0.049204 |
| morex | NOD | 0.00757713 | 0.0637085 | 0 |
| morex | RAC | 0.0279287 | 0.055988 | 0 |
| morex | INF1 | 0.046909 | 0.0498734 | 0.347028 |
| morex | INF2 | 0.0583419 | 0.00651025 | 0.110562 |
| morex | CAR5 | 0 | 0.0312497 | 0.0498051 |
| morex | CAR15 | 0 | 0 | 0.0395596 |
| morex | LEM | 0.00856307 | 0.0317563 | 0 |
| morex | LOD | 0.0740053 | 0.00549276 | 0.0354354 |
| morex | PAL | 0.0135669 | 0.00917112 | 0.0206398 |
| morex | SEN | 0 | 0 | 0.026648 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +2 | 0.0 | 820 | 497/752 (66%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+2 | 5e-151 | 506 | 285/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +2 | 0.0 | 1060 | 551/691 (80%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5282 bp)
>BART1_0-u30923.004 5282 150831_barley_pseudomolecules CCCCCCGATGGGCCGAAAGAAGCGCAGCCCCCCACCAAACCCTACTCCGCCCCCGCCCCC GCCCGCCGGCGCCCTCGTCCTCCGCCTCGCCGATGCGCCGGCCCCGGNCTCAACGACCCC GCCGCCCGCGCGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACCTC GCGCCCGACTCCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCACC GACAACCGCGCCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACGAG CCATCCGACCCGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCCGC GCCGAGCTCCGCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCAAG ACCCTCGGCGGCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGGAG CTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCACC AAGACCGTCGAGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGCTG GAGCAGCAGCAGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGTCA CAGCAGGGAGATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCGCT GATCGGAGAAAGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGAAT CAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTTGACCGAAGGCTGGCCTTACTGAAAACT AGCATTTCTGAGCTCAAGTCGTACTACAAAACTCACAAGGACAAAGATGTTGCCGATGCG GCACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACGGGTGTTGGGAGTTC TGGTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATTCATTGCGGGAGCAT GTGAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGATTGATGCTGACTGG GCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTGCGGCGCTCAAAGCG CTTGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAGATTCAATGTCATCC GATAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAGCCTCGCCACACAAT GAGGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAAAATGGCCGCTGTCT GATGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGTTCCAAACCCTTGTG AAGCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAATATGCCATGGACGAA CTTAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTGAAGAGTCGCCACTC TGCATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGTTCTTGCAAGACCTA ATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAACTAGGTGATAGAGAT TGTTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATTCTGGTTCATCATCA CTGATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTCCTGAGAATGTTGAT ACTGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAGGAGAGCAGCTATCA GAGTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGATTCTTGATATGATC GACAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATGAACAATTGAGCATT GAGGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAACGGCTAAGGGACCGT GGGGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACCGTCAGGAGGAGTTG TTGGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACATCTTGAAGGAAGTT CGCGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCTCGCGCCAATGTGAC TATGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGCACCCAAGCGATTCA GTGGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGGAGCTTGGCAAGATA GACGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATCTCAAGCTTGAACCT GCTGCTTTAGTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAATCCTTCTTGCGAGTT TAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATGCAGCAAGAGA CGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAGGGGTTGATAA AAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTAGGAGATCCAA GGATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACAGTGCAGATGA GGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACGGCAAACTTTC ACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAGTACAACTTGA AGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAGAGGAGGAGGC AAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTGATATTGGGAC AAATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATCAAAGTGCACC CAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTCGCTTTCCTAA AGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACCTGCCACAAAA GACTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAGCACATGCATT AACCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAGTTGGGAAATA TGCTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGAGCAGCACTAG CCAACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATAGTGCATCTAG TCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAGCTGACTATTC TAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTTCTTCGGATGA TCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCACCTGCAATTGT ATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAGCAGTGCACCA AAGCCTCGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTAAAAATGCTGCTGG AGAATACAACTGTTTCCTGAATGTGATTATCCAGTCATTATGGCATTTGAAGCGGTTTCG ACACGAGTTCCTTAAAACATCATCACTGCATAAGCATATTGAAGATCCTTGTGCTGTCTG TGCATTATATAATATATTCGTTGACTTGAGCAAAGCATCTGAGGGGCAAGGAGAAGCTGT TGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACAACAGGTTCTTTCA GGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTGAGTGCTTGCATAA GTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCAATTCTATCGGCTC ATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAATGGATGTCTATGA ACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGTATACCTCATTCTT CCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCCTAGATCCATTTGA TGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATCCTGACGTTGGCGG TTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTCATGTTTTTACAGT TGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTGCAACCTTGGCTGG TATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATCGAGGAAGCAAACA TTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTATCATTGCTTTGCTTTCGAGGA TGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTAGCTGGGATGATGT GGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCTTTGAAGCTGCAAA TTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGCCGTGGTGTGGTTA ACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGCGATAGAATACAAA ATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGCACTTGCCTGTCGG TTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTAAAAGGAGAGAAGT GGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCCATATCCTGTCGAA TGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATCATGTGCTGCCCCA GAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAATATATACGGTTTTT TTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGCGGGGGGTATCAAA GAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGGGGGTTTCTTATCA TCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTTTTCGCTGGCCATG ACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTATCTTGCTGTTTGGTG TTAGTTTTAGTTTATTTTTTTTGTGCAATTAGTATCAGAATTGCCACATGGCTATGCACC CC
Protein Sequence (800 aa)
>BART1_0-u30923.004 800 150831_barley_pseudomolecules PPDGPKEAQPPTKPYSAPAPARRRPRPPPRRCAGPXLNDPAARARHHQAALLAARRAVDL APDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDPEPHSLRLPAPDPDQLR AELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLLPAAPAPRRPNEIKKAT KTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGDEPPSSSSQSTASGHRA DRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKTSISELKSYYKTHKDKDVADA APAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREHVSAIPRQVQAMLPQEIDADW AAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSSDNWSIKDKSDTSESSASPHN EECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLVKHKNISVNHLNRVIQYAMDE LRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDLMQSCGLSRSSEKDGELGDRD CFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVDTDEFLSWLYAGSPPIGEQLS EWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSIEEGVLAVNNIILEEQRLRDR GGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEVRASHFGYDEGFSGMTSRQCD YDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKIDARIMRSVALMQQLDLKLEP AALVDYRSILLPLLKSFLRV