- Transcript BART1_0-u30923.003
- Transcript IDBART1_0-u30923.003
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109155 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112961 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594118608 | 594117220 | - |
| chr4H | 15 | 594119357 | 594118705 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.869041 | 1.81289 | 5.07214 |
| morex | ETI | 0 | 0.376055 | 0.0000000000740286 |
| morex | LEA | 4.76998 | 0.104203 | 0.00000599841 |
| morex | EPI | 0 | 0.000000238415 | 1.20477 |
| morex | ROO | 0.00000000876879 | 0.0000137137 | 3.32276 |
| morex | ROO2 | 0.0000944084 | 0.00000000330213 | 0.00000000019443 |
| morex | NOD | 6.16447 | 0.0175317 | 0.0000601978 |
| morex | RAC | 0.000000196977 | 0.000000281104 | 0.000000226832 |
| morex | INF1 | 10.5116 | 2.50594 | 8.44425 |
| morex | INF2 | 27.7623 | 3.08189 | 20.8927 |
| morex | CAR5 | 7.41356 | 17.982 | 19.4107 |
| morex | CAR15 | 7.22185 | 2.63151 | 5.03371 |
| morex | LEM | 1.26296 | 0.856051 | 0.92814 |
| morex | LOD | 0.0000534993 | 0.497756 | 0.00015353 |
| morex | PAL | 0.0000000183657 | 0.856038 | 0 |
| morex | SEN | 0.000000000203607 | 0.0000000323208 | 0.00000000274057 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +3 | 0.0 | 1486 | 907/1527 (59%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+3 | 2e-152 | 509 | 282/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +3 | 0.0 | 1986 | 1110/1472 (75%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5099 bp)
>BART1_0-u30923.003 5099 150831_barley_pseudomolecules CGCGCCACCACCAGGCCGCCCTCCTCGCCGCGCGCCGCGCCGTCGACCTCGCGCCCGACT CCCTCGAGCTCGCCCACTTCCGCGCCCTGCTCCTCTACGACGCCGCCACCGACAACCGCG CCTACGAGGAGGTCATCGCCGAGTGCGAGCGCGGGCTCAGGATCGACGAGCCATCCGACC CGGAGCCCCACTCGCTCCGGCTCCCCGCCCCCGACCCCGACCAGCTCCGCGCCGAGCTCC GCAACCTCGTCCAGAAGGCCAATCTCGCATCCATTTCCACCTGGGTCAAGACCCTCGGCG GCTCCGATGACAAGCTCGGCTTCTTCCGCCTGGCCGATGACCCCCTGGAGCTCCAGCTCC TGCCCGCGGCCCCAGCCCCGCGCCGCCCTAACGAGATCAAGAAGGCCACCAAGACCGTCG AGGAGCGCCGCAAGGAGATCGAGGTGCAGGTCGCCGCTCTCAGGCTGCTGGAGCAGCAGC AGCAGCAGCACAATGCCGCCGCGGCTCTCTCCTCCTCACCACCACAGTCACAGCAGGGAG ATGAGCCCCCCTCCTCATCATCTCAGTCCACCGCCTCCGGCCATCGCGCTGATCGGAGAA AGGGAGGGTCCAAAAGGGCAACAGTCTCATCGGCATCCGACCAAAGGAATCAGGACAAAG ATGTTGCCGATGCGGCACCTGCGGTGCTTGATGAGGTGGTAGAGTTTGCCACTTCACACG GGTGTTGGGAGTTCTGGTTATGTGGCATCTGTGAGGAGCGCTACCCAGATGTGGCGCATT CATTGCGGGAGCATGTGAGTGCAATACCACGTCAAGTGCAGGCTATGTTGCCACAGGAGA TTGATGCTGACTGGGCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCAGTGGATGTTGCTG CGGCGCTCAAAGCGCTTGAGGAAGAGCAAGGGGACAATATCGGCCAAGACAGGGACAAAG ATTCAATGTCATCCGATAATTGGAGTATCAAGGACAAGTCGGACACCTCAGAATCCTCAG CCTCGCCACACAATGAGGAGTGTGATGGTTTTGGAGTGGTAATGAGGGAAGGTGCCCGAA AATGGCCGCTGTCTGATGATGATGAAAGAGCGAAGATTTTGGAGAGGATCCATTCATTGT TCCAAACCCTTGTGAAGCATAAAAACATTTCAGTGAACCATCTGAACAGGGTGATACAAT ATGCCATGGACGAACTTAGAGGGATGCCTTCTGCGTCATTGTTGCTTAACCACTCTATTG AAGAGTCGCCACTCTGCATTTGCTTCTTGGAGGCCTCATCACTGAAGAAGGTTCTCAAGT TCTTGCAAGACCTAATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAGAAGGATGGCGAAC TAGGTGATAGAGATTGTTTCCCCAAAAATAACACTATCCTTGAGGGTGTTACGCTGGATT CTGGTTCATCATCACTGATCCTTGATGGCCGGGTATTTGGCGGGAAGTCGAAGTCTGGTC CTGAGAATGTTGATACTGATGAATTCCTTTCGTGGCTGTATGCTGGATCTCCTCCAATAG GAGAGCAGCTATCAGAGTGGAACTGTATGCTTGTTGATAGGACAAGTCAAGGGATGCAGA TTCTTGATATGATCGACAAGGAGGCATCTGTCTTGAGAAACTTGTGTGAAATGAAGCATG AACAATTGAGCATTGAGGAGGGTGTGCTTGCTGTGAACAATATTATACTTGAGGAGCAAC GGCTAAGGGACCGTGGGGGGCGGTATTCATATCAAGGGTTCGAGGATCTCTTGAGGAACC GTCAGGAGGAGTTGTTGGAGACCAGATTTCGCAGCTCTGAGTACGATGCAATCTCAAACA TCTTGAAGGAAGTTCGCGCCTCACACTTTGGTTATGATGAAGGTTTTTCTGGGATGACCT CGCGCCAATGTGACTATGATGGGGCAGTAATAGATGATTGGAGGTTGCATGACTTTATGC ACCCAAGCGATTCAGTGGTGCCGTCGATTGTTTTGAGGATGAAGGAACATGCAACTACGG AGCTTGGCAAGATAGACGCTAGGATTATGCGAAGTGTAGCTCTGATGCAGCAACTGGATC TCAAGCTTGAACCTGCTGCTTTAGTTGATTATCGATCAATTCTTCTCCCCCTCCTGAAAT CCTTCTTGCGAAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGAGAGAGATCTGATG CAGCAAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAGAGTGCAAACAAAG GGGTTGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGAATGAAGGATTCTA GGAGATCCAAGGATATCAAGGATTTGAGCTGGAGTGATCAATACATTGTTCGCCAGGACA GTGCAGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGTGATGACTTTGACG GCAAACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAGCTTAGGCATAGAG TACAACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTACCAAAGGCGGATAG AGGAGGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACTTCGTCAGCTCCTG ATATTGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGTGCATCAGGATAACCATC AAAGTGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAGTTTGGTGATTTTC GCTTTCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTTTGTGGTGTGGACC TGCCACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGGACTGTGCTCTCCTGGAG CACATGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGCACTGAAAATGAACGGAG TTGGGAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCTCATCCAAAGGTCTAAGA GCAGCACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGTTCATAATGGTGATGATA GTGCATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGTTCTGGCAAAGCAG CTGACTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTGCCACCTGTGCTTT CTTCGGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAGGGGGCAATCTCAC CTGCAATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAAGACCTCAGAAAAG CAGTGCACCAAAGCCTCGCAGGCACTTCAAATGGGAAAGAAGTGTATGGGGCTGGCCTTA AAAATGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTATCCAGTCATTATGGCATT TGAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAGCATATTGAAGATC CTTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAAGCATCTGAGGGGC AAGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCCTATCCTAACA ACAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGGGTGTGATCTTTG AGTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCTCACGAGGGCA ATTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGTCTTTTTGGAA TGGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGACGACTTAAGT ATACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAAAGATGATGTGCC TAGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAGCTAGCTTGTGATC CTGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACATTCTTTCTAGTTCCCCTC ATGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGATGACATAGCTG CAACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACCGTGGTCTAGATC GAGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCATTATCATTGCT TTGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTTAAGGTTATTGGTA GCTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAAGTGCTCTTCT TTGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGCTGTGCTGTGC CGTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGAGAAGGTTAGC GATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTTCAGCAGTTGC ACTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGAGCCTTTACTA AAAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGATATAGCCTGACCCC ATATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACTCTACTCGATC ATGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAAGCTTATCAAT ATATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGTGACGAAGGGC GGGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAATTCCTGGGAGG GGGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGTGAAGCCTGTT TTCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTCGCTTGTTATC TTGCTGTTTGGTGTTAGTTTTAGTTTATTTTTTTTGTGCAATTAGTATCAGAATTGCCAC ATGGCTATGCACCCCTTTTGCAGCTATGCTGCACCCCACCAGCAACCTTACGATTCACT
Protein Sequence (1444 aa)
>BART1_0-u30923.003 1444 150831_barley_pseudomolecules RHHQAALLAARRAVDLAPDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDP EPHSLRLPAPDPDQLRAELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLL PAAPAPRRPNEIKKATKTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGD EPPSSSSQSTASGHRADRRKGGSKRATVSSASDQRNQDKDVADAAPAVLDEVVEFATSHG CWEFWLCGICEERYPDVAHSLREHVSAIPRQVQAMLPQEIDADWAAMLLGSSWRPVDVAA ALKALEEEQGDNIGQDRDKDSMSSDNWSIKDKSDTSESSASPHNEECDGFGVVMREGARK WPLSDDDERAKILERIHSLFQTLVKHKNISVNHLNRVIQYAMDELRGMPSASLLLNHSIE ESPLCICFLEASSLKKVLKFLQDLMQSCGLSRSSEKDGELGDRDCFPKNNTILEGVTLDS GSSSLILDGRVFGGKSKSGPENVDTDEFLSWLYAGSPPIGEQLSEWNCMLVDRTSQGMQI LDMIDKEASVLRNLCEMKHEQLSIEEGVLAVNNIILEEQRLRDRGGRYSYQGFEDLLRNR QEELLETRFRSSEYDAISNILKEVRASHFGYDEGFSGMTSRQCDYDGAVIDDWRLHDFMH PSDSVVPSIVLRMKEHATTELGKIDARIMRSVALMQQLDLKLEPAALVDYRSILLPLLKS FLRNHLEELADKDARERSDAARDAFLAELALDAEKSANKGVDKKLTHEKSKDKKRMKDSR RSKDIKDLSWSDQYIVRQDSADEETSEQAQTLVDCDDFDGKLSLSDEYSNEQEEELRHRV QLEAEERKLEETLEYQRRIEEEAKQKHLAEQSRSTSSAPDIGTNGYSTDVNSSVHQDNHQ SAPNNVSPAYLEGIKFGDFRFPKVPSREKNSSSDFCGVDLPQKTENNRREKPNGLCSPGA HALTSNNVDFTKPALKMNGVGKYAQNTKLATNPLIQRSKSSTSQPHKKYIQGAVHNGDDS ASSRQNGTAALRWSSSGKAADYSSNSYQDGRQNELPPVLSSDDPWNANKAEKADKGAISP AIVCIEDDSDKRFEEDLRKAVHQSLAGTSNGKEVYGAGLKNAAGEYNCFLNVIIQSLWHL KRFRHEFLKTSSLHKHIEDPCAVCALYNIFVDLSKASEGQGEAVAPTSLRIALSKSYPNN RFFQEGQMNDASEVLGVIFECLHKSYTSRAECHAKSHEGNSIGSWDCASDFCIAHCLFGM DVYERMNCHNCGLESRRLKYTSFFHNINASSLRTAKMMCLDPFDDLLKTVIMNDQLACDP DVGGCGKPNHIHHILSSSPHVFTVVLGWQNSKESVDDIAATLAGISTEIDISVFYRGLDR GSKHFLVSVVCYYGQHYHCFAFEDEHWVMYDDQTVKVIGSWDDVVIMCEKGHLQPQVLFF EAAN